miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14257 3' -46.8 NC_003521.1 + 117564 0.66 0.999994
Target:  5'- -----gGAGCCUACgaUCCCGgcgucuacUGGGCg -3'
miRNA:   3'- aaaacgUUUGGAUGaaAGGGC--------ACUCG- -5'
14257 3' -46.8 NC_003521.1 + 163154 0.66 0.999994
Target:  5'- --gUGCcccccGGCCUGCUgucUCCCGacGGCa -3'
miRNA:   3'- aaaACGu----UUGGAUGAa--AGGGCacUCG- -5'
14257 3' -46.8 NC_003521.1 + 48675 0.66 0.999991
Target:  5'- ---cGCAGACCUACguggaUCCgCGgacgccgacgGAGCc -3'
miRNA:   3'- aaaaCGUUUGGAUGaa---AGG-GCa---------CUCG- -5'
14257 3' -46.8 NC_003521.1 + 49796 0.66 0.999991
Target:  5'- ---aGCAGACgCUGCcg-CCCGaauggcUGGGCg -3'
miRNA:   3'- aaaaCGUUUG-GAUGaaaGGGC------ACUCG- -5'
14257 3' -46.8 NC_003521.1 + 129822 0.66 0.999988
Target:  5'- --gUGCugggccGCCUGCUgcuggggCCCGUG-GCc -3'
miRNA:   3'- aaaACGuu----UGGAUGAaa-----GGGCACuCG- -5'
14257 3' -46.8 NC_003521.1 + 153875 0.66 0.999988
Target:  5'- ---cGCcAGCCUGgUUUCCaaGUGGGUg -3'
miRNA:   3'- aaaaCGuUUGGAUgAAAGGg-CACUCG- -5'
14257 3' -46.8 NC_003521.1 + 970 0.66 0.999983
Target:  5'- ---cGCAAcgagagGCCgGCggucugcUCCCGUGGGCc -3'
miRNA:   3'- aaaaCGUU------UGGaUGaa-----AGGGCACUCG- -5'
14257 3' -46.8 NC_003521.1 + 43982 0.66 0.999983
Target:  5'- ---cGCAGAgCUGCUcggggUUCGUGGGCc -3'
miRNA:   3'- aaaaCGUUUgGAUGAaa---GGGCACUCG- -5'
14257 3' -46.8 NC_003521.1 + 233857 0.66 0.999983
Target:  5'- ---cGUcuGCCgguCUUUCCCGcGAGUa -3'
miRNA:   3'- aaaaCGuuUGGau-GAAAGGGCaCUCG- -5'
14257 3' -46.8 NC_003521.1 + 92521 0.66 0.999977
Target:  5'- --gUGCuGAGCa-ACUUUCCCGaccUGGGCu -3'
miRNA:   3'- aaaACG-UUUGgaUGAAAGGGC---ACUCG- -5'
14257 3' -46.8 NC_003521.1 + 99607 0.66 0.999977
Target:  5'- -gUUGguGACCUGCagcgCCCGgcGGCg -3'
miRNA:   3'- aaAACguUUGGAUGaaa-GGGCacUCG- -5'
14257 3' -46.8 NC_003521.1 + 120547 0.66 0.999977
Target:  5'- ---gGC-GGCCgGCggUCCCGgggGAGCg -3'
miRNA:   3'- aaaaCGuUUGGaUGaaAGGGCa--CUCG- -5'
14257 3' -46.8 NC_003521.1 + 30302 0.66 0.999977
Target:  5'- ---aGguAAUgUGCUUUCCCGUaAGUg -3'
miRNA:   3'- aaaaCguUUGgAUGAAAGGGCAcUCG- -5'
14257 3' -46.8 NC_003521.1 + 155433 0.67 0.999968
Target:  5'- --gUGCGAGCUgGCcgaCCCGcUGGGCg -3'
miRNA:   3'- aaaACGUUUGGaUGaaaGGGC-ACUCG- -5'
14257 3' -46.8 NC_003521.1 + 162411 0.67 0.999968
Target:  5'- ---gGU--ACCUGUgaUCCCGUGGGCg -3'
miRNA:   3'- aaaaCGuuUGGAUGaaAGGGCACUCG- -5'
14257 3' -46.8 NC_003521.1 + 139679 0.67 0.999968
Target:  5'- ---cGCAGACCgcgccgcGCUUUCCgCGUGcccGCc -3'
miRNA:   3'- aaaaCGUUUGGa------UGAAAGG-GCACu--CG- -5'
14257 3' -46.8 NC_003521.1 + 149366 0.67 0.999962
Target:  5'- --cUGCGcACCUGuCUgcgccucgucaccCCCGUGGGCu -3'
miRNA:   3'- aaaACGUuUGGAU-GAaa-----------GGGCACUCG- -5'
14257 3' -46.8 NC_003521.1 + 156519 0.67 0.999943
Target:  5'- --gUGCAGACCUACacgCUCGaaGGCu -3'
miRNA:   3'- aaaACGUUUGGAUGaaaGGGCacUCG- -5'
14257 3' -46.8 NC_003521.1 + 23333 0.67 0.999941
Target:  5'- --aUGCAGgccACCUGCacgUUCCUGcugugucUGGGCa -3'
miRNA:   3'- aaaACGUU---UGGAUGa--AAGGGC-------ACUCG- -5'
14257 3' -46.8 NC_003521.1 + 94918 0.67 0.9999
Target:  5'- gUUUGCGAACCgccGCUgcUCCCGccgccGGCg -3'
miRNA:   3'- aAAACGUUUGGa--UGAa-AGGGCac---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.