miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14257 5' -57.2 NC_003521.1 + 179475 0.66 0.949293
Target:  5'- -uACUCcugaCGGGUAcGCUCcggcagCGCCGGGg -3'
miRNA:   3'- cuUGAGc---GCCUAUcCGAGa-----GCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 192656 0.66 0.949293
Target:  5'- gGAACUCGgGcuUGGGCgucuugggCUCGCCGa- -3'
miRNA:   3'- -CUUGAGCgCcuAUCCGa-------GAGCGGCcc -5'
14257 5' -57.2 NC_003521.1 + 207694 0.66 0.949293
Target:  5'- cGAGCccuaCGCGGAaaggcgaAGGCUUUCGCCa-- -3'
miRNA:   3'- -CUUGa---GCGCCUa------UCCGAGAGCGGccc -5'
14257 5' -57.2 NC_003521.1 + 134256 0.66 0.945166
Target:  5'- cGACUCGCaGAUcGuGCUCUCGCgacCGGc -3'
miRNA:   3'- cUUGAGCGcCUAuC-CGAGAGCG---GCCc -5'
14257 5' -57.2 NC_003521.1 + 68422 0.66 0.945166
Target:  5'- ----cCGCGGcgAcGGCUC-CGCCGGc -3'
miRNA:   3'- cuugaGCGCCuaU-CCGAGaGCGGCCc -5'
14257 5' -57.2 NC_003521.1 + 127829 0.66 0.945166
Target:  5'- cAGCUCGUGGAaGGGCcccggcgccagCcCGUCGGGc -3'
miRNA:   3'- cUUGAGCGCCUaUCCGa----------GaGCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 198283 0.66 0.945166
Target:  5'- cGGGCgUCGCGGAggaccgcugggGGGCUCcggGuuGGGa -3'
miRNA:   3'- -CUUG-AGCGCCUa----------UCCGAGag-CggCCC- -5'
14257 5' -57.2 NC_003521.1 + 173037 0.66 0.945166
Target:  5'- -cGCUCGCcGGUGGGCa---GCUGGGu -3'
miRNA:   3'- cuUGAGCGcCUAUCCGagagCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 144068 0.66 0.940825
Target:  5'- cGAGCUgGCGGcgcUGGGCaacgUGCUGGGc -3'
miRNA:   3'- -CUUGAgCGCCu--AUCCGaga-GCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 195577 0.66 0.940825
Target:  5'- -cGCUUGgGGGUcAGGCccgUCU-GCCGGGc -3'
miRNA:   3'- cuUGAGCgCCUA-UCCG---AGAgCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 113520 0.66 0.936267
Target:  5'- aGAGCgugcgcaGCGGcUGGGauccCUCgCGCCGGGa -3'
miRNA:   3'- -CUUGag-----CGCCuAUCC----GAGaGCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 103066 0.66 0.936267
Target:  5'- aGGGCgggugCGCGGGcgaGGGCUgcUGCUGGGg -3'
miRNA:   3'- -CUUGa----GCGCCUa--UCCGAgaGCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 70598 0.66 0.936267
Target:  5'- cGAGCUCGCGGuugAGaaaGCgCUUGUCGGu -3'
miRNA:   3'- -CUUGAGCGCCua-UC---CGaGAGCGGCCc -5'
14257 5' -57.2 NC_003521.1 + 122682 0.66 0.931492
Target:  5'- uGGCgUCGcCGGugaucAUGGGCgUCUCGgCGGGg -3'
miRNA:   3'- cUUG-AGC-GCC-----UAUCCG-AGAGCgGCCC- -5'
14257 5' -57.2 NC_003521.1 + 188618 0.66 0.931492
Target:  5'- uAGCUCGUGGAUAGGUgacCUUGUCc-- -3'
miRNA:   3'- cUUGAGCGCCUAUCCGa--GAGCGGccc -5'
14257 5' -57.2 NC_003521.1 + 75979 0.66 0.931492
Target:  5'- ----aCGaGGAgcGGCcCUCGCCGGGc -3'
miRNA:   3'- cuugaGCgCCUauCCGaGAGCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 170432 0.66 0.931492
Target:  5'- uGAGCUCGCGG-UAGuGUUCUUGUCc-- -3'
miRNA:   3'- -CUUGAGCGCCuAUC-CGAGAGCGGccc -5'
14257 5' -57.2 NC_003521.1 + 164738 0.66 0.931492
Target:  5'- -cACcagCGCGGGagggGGGCaUCgcggUCGCCGGGc -3'
miRNA:   3'- cuUGa--GCGCCUa---UCCG-AG----AGCGGCCC- -5'
14257 5' -57.2 NC_003521.1 + 235463 0.66 0.931003
Target:  5'- aGAACgCGCGGGcccucucacGGGCUUaccacuaUCGCCGGa -3'
miRNA:   3'- -CUUGaGCGCCUa--------UCCGAG-------AGCGGCCc -5'
14257 5' -57.2 NC_003521.1 + 212483 0.66 0.930017
Target:  5'- aGAACUCgcuaucggccaccgGCGGuccgcAGGC-CgCGCCGGGg -3'
miRNA:   3'- -CUUGAG--------------CGCCua---UCCGaGaGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.