miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14258 3' -58 NC_003521.1 + 25771 1.1 0.002239
Target:  5'- cGUCCUAAUCGCCUGCCUGGCCCUGUCg -3'
miRNA:   3'- -CAGGAUUAGCGGACGGACCGGGACAG- -5'
14258 3' -58 NC_003521.1 + 35608 0.8 0.214399
Target:  5'- -cCCUGAUcCGCCUGCC-GGCCCUGg- -3'
miRNA:   3'- caGGAUUA-GCGGACGGaCCGGGACag -5'
14258 3' -58 NC_003521.1 + 175337 0.71 0.616558
Target:  5'- ----aGGUCGCCUGCCUGGUcaCCUcGUCc -3'
miRNA:   3'- caggaUUAGCGGACGGACCG--GGA-CAG- -5'
14258 3' -58 NC_003521.1 + 25681 0.71 0.635458
Target:  5'- cGUCCUGGUgaCGCUgGCCUucguggcGGCCCUGaUCg -3'
miRNA:   3'- -CAGGAUUA--GCGGaCGGA-------CCGGGAC-AG- -5'
14258 3' -58 NC_003521.1 + 130353 0.71 0.660304
Target:  5'- -cCCUGAUCcCCUGCCUGGagcaggaauuccuccCCCUGg- -3'
miRNA:   3'- caGGAUUAGcGGACGGACC---------------GGGACag -5'
14258 3' -58 NC_003521.1 + 206682 0.7 0.666252
Target:  5'- uUCgUGcgCGUggGCCUGGCCCUGcUCa -3'
miRNA:   3'- cAGgAUuaGCGgaCGGACCGGGAC-AG- -5'
14258 3' -58 NC_003521.1 + 18185 0.7 0.686001
Target:  5'- --gCUGcgCGCCUGCC-GGCCCuucgaucacaUGUCg -3'
miRNA:   3'- cagGAUuaGCGGACGGaCCGGG----------ACAG- -5'
14258 3' -58 NC_003521.1 + 221120 0.69 0.753356
Target:  5'- cUUCUcAUCGCCcuugucccgGCCUGGC-CUGUCa -3'
miRNA:   3'- cAGGAuUAGCGGa--------CGGACCGgGACAG- -5'
14258 3' -58 NC_003521.1 + 240049 0.68 0.807265
Target:  5'- gGUCCUccgccGAUggCGCCUGCUUGGCCUc--- -3'
miRNA:   3'- -CAGGA-----UUA--GCGGACGGACCGGGacag -5'
14258 3' -58 NC_003521.1 + 39822 0.68 0.807265
Target:  5'- gGUCCUccgccGAUggCGCCUGCUUGGCCUc--- -3'
miRNA:   3'- -CAGGA-----UUA--GCGGACGGACCGGGacag -5'
14258 3' -58 NC_003521.1 + 23439 0.67 0.823292
Target:  5'- -gCCUGGcggUGCCcacggugUGCCUGGCCgUGUUa -3'
miRNA:   3'- caGGAUUa--GCGG-------ACGGACCGGgACAG- -5'
14258 3' -58 NC_003521.1 + 191773 0.67 0.82412
Target:  5'- uGUCC-GGUCGCCUGCCcGaCCUUGcCg -3'
miRNA:   3'- -CAGGaUUAGCGGACGGaCcGGGACaG- -5'
14258 3' -58 NC_003521.1 + 149363 0.67 0.840315
Target:  5'- uUCCUGcgCaCCUGUCUGcGCCUcGUCa -3'
miRNA:   3'- cAGGAUuaGcGGACGGAC-CGGGaCAG- -5'
14258 3' -58 NC_003521.1 + 54015 0.67 0.840315
Target:  5'- -aUCUGGUCGCCcacGCCgUGGCgCCUGa- -3'
miRNA:   3'- caGGAUUAGCGGa--CGG-ACCG-GGACag -5'
14258 3' -58 NC_003521.1 + 124182 0.67 0.841106
Target:  5'- -gCCUGugCGCCUGCCggcugggggugagcgGGCCCUuUCu -3'
miRNA:   3'- caGGAUuaGCGGACGGa--------------CCGGGAcAG- -5'
14258 3' -58 NC_003521.1 + 131365 0.67 0.853521
Target:  5'- uUCCcagAcgCGCCcauacccgagaccgUGCCcacGGCCCUGUCu -3'
miRNA:   3'- cAGGa--UuaGCGG--------------ACGGa--CCGGGACAG- -5'
14258 3' -58 NC_003521.1 + 112899 0.67 0.863252
Target:  5'- -gCCgcgaGAUCGCC-GCCUgggagGGCCCcGUCa -3'
miRNA:   3'- caGGa---UUAGCGGaCGGA-----CCGGGaCAG- -5'
14258 3' -58 NC_003521.1 + 89161 0.66 0.870511
Target:  5'- -cCCUGGacggcuggGCCguggGCCUGGCCCUGc- -3'
miRNA:   3'- caGGAUUag------CGGa---CGGACCGGGACag -5'
14258 3' -58 NC_003521.1 + 187437 0.66 0.870511
Target:  5'- -cCCUGcUCGCCgcgGCCUGcUCCUGcUCg -3'
miRNA:   3'- caGGAUuAGCGGa--CGGACcGGGAC-AG- -5'
14258 3' -58 NC_003521.1 + 68629 0.66 0.870511
Target:  5'- uUCCUGggCGCCcugaacaugUGCCUGcCCCUGa- -3'
miRNA:   3'- cAGGAUuaGCGG---------ACGGACcGGGACag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.