Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14258 | 5' | -56.9 | NC_003521.1 | + | 198375 | 0.67 | 0.89241 |
Target: 5'- aGCGccGGACGGCguugUGGCGG-GCGgcgACu -3' miRNA: 3'- -UGC--UCUGCCGag--ACCGCCaCGCaa-UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 112445 | 0.68 | 0.885848 |
Target: 5'- gGCGgcccAGGCGGCcCUGGUGGgcgcgcccgGCGggGCc -3' miRNA: 3'- -UGC----UCUGCCGaGACCGCCa--------CGCaaUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 164210 | 0.68 | 0.885848 |
Target: 5'- gGCGGGGCGGC---GGUGGUaGCGgcgGCu -3' miRNA: 3'- -UGCUCUGCCGagaCCGCCA-CGCaa-UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 78808 | 0.68 | 0.879077 |
Target: 5'- gACGAG-CGGCcCUGGUGGcGCcagucguaacgGUUACg -3' miRNA: 3'- -UGCUCuGCCGaGACCGCCaCG-----------CAAUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 164693 | 0.68 | 0.869967 |
Target: 5'- gACGAGGcCGGCggCUGacgaagaagacgacGCGGUGCGgccUACc -3' miRNA: 3'- -UGCUCU-GCCGa-GAC--------------CGCCACGCa--AUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 138710 | 0.68 | 0.864921 |
Target: 5'- gGCGGcACgGGCgcuggCUGGUGGUGCGUccggaggguUACg -3' miRNA: 3'- -UGCUcUG-CCGa----GACCGCCACGCA---------AUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 150969 | 0.68 | 0.858292 |
Target: 5'- cGCGAcGCGGCgCUGGCGGccgacaucggcuacgGCGUcUACg -3' miRNA: 3'- -UGCUcUGCCGaGACCGCCa--------------CGCA-AUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 150531 | 0.68 | 0.857546 |
Target: 5'- aGCGGGAgccguggggucCGGCggUGGUGGUGCGgguggugGCg -3' miRNA: 3'- -UGCUCU-----------GCCGagACCGCCACGCaa-----UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 207440 | 0.68 | 0.84998 |
Target: 5'- -gGAGAgCGGCggCUGGCGGcgUGUGUgagugACg -3' miRNA: 3'- ugCUCU-GCCGa-GACCGCC--ACGCAa----UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 196727 | 0.68 | 0.84998 |
Target: 5'- gGCGGcGACGGUggUGGCGGcgGCGccUGCa -3' miRNA: 3'- -UGCU-CUGCCGagACCGCCa-CGCa-AUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 173419 | 0.69 | 0.84223 |
Target: 5'- -gGAGGgGGCgcugCUGGUGGUGCa---- -3' miRNA: 3'- ugCUCUgCCGa---GACCGCCACGcaaug -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 120936 | 0.69 | 0.84223 |
Target: 5'- cGCGGcGGCGGCUCcGGCGaGgggcaggggGCGggGCg -3' miRNA: 3'- -UGCU-CUGCCGAGaCCGC-Ca--------CGCaaUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 113110 | 0.69 | 0.84223 |
Target: 5'- -gGAG-CGGCUCUcgGGCcaGGUGCGcgACg -3' miRNA: 3'- ugCUCuGCCGAGA--CCG--CCACGCaaUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 38455 | 0.69 | 0.84223 |
Target: 5'- gACGAuGAaaccgucugGGCUCUGGCGGUGgGcgccgGCg -3' miRNA: 3'- -UGCU-CUg--------CCGAGACCGCCACgCaa---UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 193142 | 0.69 | 0.834301 |
Target: 5'- -aGAGGggaGGCUCaUGGCGGggGCGUcUGCu -3' miRNA: 3'- ugCUCUg--CCGAG-ACCGCCa-CGCA-AUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 99404 | 0.69 | 0.8262 |
Target: 5'- aGCGAGACgGGCUUUaaaGGCaGGUGCaguuccccuccGUUGCu -3' miRNA: 3'- -UGCUCUG-CCGAGA---CCG-CCACG-----------CAAUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 98629 | 0.69 | 0.817934 |
Target: 5'- gGCGAGAgCGGCggcGGCGGUagcgGCGUcgACg -3' miRNA: 3'- -UGCUCU-GCCGagaCCGCCA----CGCAa-UG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 105625 | 0.69 | 0.817934 |
Target: 5'- aGCaGGGCGuGCUCgGGCGuGUGCGUg-- -3' miRNA: 3'- -UGcUCUGC-CGAGaCCGC-CACGCAaug -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 144747 | 0.69 | 0.817934 |
Target: 5'- gACGAGGagcugaccCGGCUgCUGGCGGUcUGggACg -3' miRNA: 3'- -UGCUCU--------GCCGA-GACCGCCAcGCaaUG- -5' |
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14258 | 5' | -56.9 | NC_003521.1 | + | 209086 | 0.69 | 0.80951 |
Target: 5'- uCGAGGCGGCggaGGCGGUGgcCGcgGCg -3' miRNA: 3'- uGCUCUGCCGagaCCGCCAC--GCaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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