miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 3' -55.9 NC_003521.1 + 120580 0.66 0.971371
Target:  5'- gGCGAUGcacgGCgcgGCCGCcggcUCCUGccgguagcGUCUGCg -3'
miRNA:   3'- -CGCUGCa---CG---UGGCGa---AGGAC--------CAGACG- -5'
14260 3' -55.9 NC_003521.1 + 169009 0.66 0.971371
Target:  5'- gGCGACGgggccgGCACgaucuugacgugCGUgacgUCCUGGUCguccggggggaUGCg -3'
miRNA:   3'- -CGCUGCa-----CGUG------------GCGa---AGGACCAG-----------ACG- -5'
14260 3' -55.9 NC_003521.1 + 121348 0.66 0.971371
Target:  5'- aUGACGUGCGCCGuCUUgCCcGGcUUGa -3'
miRNA:   3'- cGCUGCACGUGGC-GAA-GGaCCaGACg -5'
14260 3' -55.9 NC_003521.1 + 105721 0.66 0.971097
Target:  5'- aGCGACGc-CACCuGCUUCCUGacgcGUCUcaauaacGCg -3'
miRNA:   3'- -CGCUGCacGUGG-CGAAGGAC----CAGA-------CG- -5'
14260 3' -55.9 NC_003521.1 + 171409 0.66 0.968543
Target:  5'- -gGugGUGCgcGCCGUcaccgUCCcGcGUCUGCu -3'
miRNA:   3'- cgCugCACG--UGGCGa----AGGaC-CAGACG- -5'
14260 3' -55.9 NC_003521.1 + 89165 0.66 0.968543
Target:  5'- -gGACGgcUGgGCCGUgggCCUGGccCUGCu -3'
miRNA:   3'- cgCUGC--ACgUGGCGaa-GGACCa-GACG- -5'
14260 3' -55.9 NC_003521.1 + 152090 0.66 0.968543
Target:  5'- gGCGACGUGCGCCGg--C----UCUGCg -3'
miRNA:   3'- -CGCUGCACGUGGCgaaGgaccAGACG- -5'
14260 3' -55.9 NC_003521.1 + 15740 0.66 0.968543
Target:  5'- aCGAUGUGcCAUCGgcgCCUGGaaugguUCUGCa -3'
miRNA:   3'- cGCUGCAC-GUGGCgaaGGACC------AGACG- -5'
14260 3' -55.9 NC_003521.1 + 55978 0.66 0.968543
Target:  5'- cCGAUGUGCagggGCCGCagCC-GGUCcacgGCg -3'
miRNA:   3'- cGCUGCACG----UGGCGaaGGaCCAGa---CG- -5'
14260 3' -55.9 NC_003521.1 + 53523 0.66 0.968543
Target:  5'- aGCGGCcgaugGUGCuguCCGC-UCCgGGUCgagGUg -3'
miRNA:   3'- -CGCUG-----CACGu--GGCGaAGGaCCAGa--CG- -5'
14260 3' -55.9 NC_003521.1 + 76373 0.66 0.968543
Target:  5'- gGCGAcCGUGacgGCCGCggCCgcggUGGcgCUGCu -3'
miRNA:   3'- -CGCU-GCACg--UGGCGaaGG----ACCa-GACG- -5'
14260 3' -55.9 NC_003521.1 + 109260 0.66 0.968543
Target:  5'- uGCuGACgGUGCagGCCGgUUCCUugaaGGUgUGCu -3'
miRNA:   3'- -CG-CUG-CACG--UGGCgAAGGA----CCAgACG- -5'
14260 3' -55.9 NC_003521.1 + 143219 0.66 0.968543
Target:  5'- aCGACGUGCACUGCa-CCUGcUCcaacgaGCa -3'
miRNA:   3'- cGCUGCACGUGGCGaaGGACcAGa-----CG- -5'
14260 3' -55.9 NC_003521.1 + 33946 0.66 0.968543
Target:  5'- uGCGGCGUGCGCgGCgagcagCUGGa--GCg -3'
miRNA:   3'- -CGCUGCACGUGgCGaag---GACCagaCG- -5'
14260 3' -55.9 NC_003521.1 + 194721 0.66 0.968543
Target:  5'- uGCGucCGgagGCGgCGCUaCaaGGUCUGCg -3'
miRNA:   3'- -CGCu-GCa--CGUgGCGAaGgaCCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 174515 0.66 0.968543
Target:  5'- cGCGAUGgccGCGCUGgUUCCauuagUGGUCUu- -3'
miRNA:   3'- -CGCUGCa--CGUGGCgAAGG-----ACCAGAcg -5'
14260 3' -55.9 NC_003521.1 + 111185 0.66 0.968543
Target:  5'- gGCGACG-GCGCCGCggaCggugGG-CUGg -3'
miRNA:   3'- -CGCUGCaCGUGGCGaagGa---CCaGACg -5'
14260 3' -55.9 NC_003521.1 + 101864 0.66 0.968543
Target:  5'- gGCGGCG-GUacaugaaguaGCCGUcgUCCUGGUCcaucuUGUa -3'
miRNA:   3'- -CGCUGCaCG----------UGGCGa-AGGACCAG-----ACG- -5'
14260 3' -55.9 NC_003521.1 + 70691 0.66 0.968543
Target:  5'- aCGGCGUcuGCGCCGCaagCUGcGUCgGCg -3'
miRNA:   3'- cGCUGCA--CGUGGCGaagGAC-CAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 34339 0.66 0.968543
Target:  5'- aGCGGCGcaggGCggagGCCGUgaggcccaggUCCUGGgcgUUGCg -3'
miRNA:   3'- -CGCUGCa---CG----UGGCGa---------AGGACCa--GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.