miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 3' -55.9 NC_003521.1 + 136824 0.66 0.965521
Target:  5'- cCGGCGUGCgcauguacuacGCCGuCUUcaccacCCUGGgcCUGCg -3'
miRNA:   3'- cGCUGCACG-----------UGGC-GAA------GGACCa-GACG- -5'
14260 3' -55.9 NC_003521.1 + 91027 0.66 0.958876
Target:  5'- uGCG-CGUGCGCCGCa-CC-GuGUCgGCg -3'
miRNA:   3'- -CGCuGCACGUGGCGaaGGaC-CAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 143219 0.66 0.968543
Target:  5'- aCGACGUGCACUGCa-CCUGcUCcaacgaGCa -3'
miRNA:   3'- cGCUGCACGUGGCGaaGGACcAGa-----CG- -5'
14260 3' -55.9 NC_003521.1 + 144960 0.66 0.965521
Target:  5'- cGCGACGaaggGCugCGCgacaUCCUGaGcCaGCg -3'
miRNA:   3'- -CGCUGCa---CGugGCGa---AGGAC-CaGaCG- -5'
14260 3' -55.9 NC_003521.1 + 53523 0.66 0.968543
Target:  5'- aGCGGCcgaugGUGCuguCCGC-UCCgGGUCgagGUg -3'
miRNA:   3'- -CGCUG-----CACGu--GGCGaAGGaCCAGa--CG- -5'
14260 3' -55.9 NC_003521.1 + 154939 0.66 0.9623
Target:  5'- uGCGACacGCgccucuACCGCgagcgCCUGGUgccCUGCa -3'
miRNA:   3'- -CGCUGcaCG------UGGCGaa---GGACCA---GACG- -5'
14260 3' -55.9 NC_003521.1 + 70691 0.66 0.968543
Target:  5'- aCGGCGUcuGCGCCGCaagCUGcGUCgGCg -3'
miRNA:   3'- cGCUGCA--CGUGGCGaagGAC-CAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 15740 0.66 0.968543
Target:  5'- aCGAUGUGcCAUCGgcgCCUGGaaugguUCUGCa -3'
miRNA:   3'- cGCUGCAC-GUGGCgaaGGACC------AGACG- -5'
14260 3' -55.9 NC_003521.1 + 34339 0.66 0.968543
Target:  5'- aGCGGCGcaggGCggagGCCGUgaggcccaggUCCUGGgcgUUGCg -3'
miRNA:   3'- -CGCUGCa---CG----UGGCGa---------AGGACCa--GACG- -5'
14260 3' -55.9 NC_003521.1 + 120580 0.66 0.971371
Target:  5'- gGCGAUGcacgGCgcgGCCGCcggcUCCUGccgguagcGUCUGCg -3'
miRNA:   3'- -CGCUGCa---CG---UGGCGa---AGGAC--------CAGACG- -5'
14260 3' -55.9 NC_003521.1 + 111185 0.66 0.968543
Target:  5'- gGCGACG-GCGCCGCggaCggugGG-CUGg -3'
miRNA:   3'- -CGCUGCaCGUGGCGaagGa---CCaGACg -5'
14260 3' -55.9 NC_003521.1 + 101864 0.66 0.968543
Target:  5'- gGCGGCG-GUacaugaaguaGCCGUcgUCCUGGUCcaucuUGUa -3'
miRNA:   3'- -CGCUGCaCG----------UGGCGa-AGGACCAG-----ACG- -5'
14260 3' -55.9 NC_003521.1 + 49115 0.66 0.958876
Target:  5'- cGCGugGUG-ACCGCggcgCCgcugCUGCg -3'
miRNA:   3'- -CGCugCACgUGGCGaa--GGaccaGACG- -5'
14260 3' -55.9 NC_003521.1 + 55978 0.66 0.968543
Target:  5'- cCGAUGUGCagggGCCGCagCC-GGUCcacgGCg -3'
miRNA:   3'- cGCUGCACG----UGGCGaaGGaCCAGa---CG- -5'
14260 3' -55.9 NC_003521.1 + 121348 0.66 0.971371
Target:  5'- aUGACGUGCGCCGuCUUgCCcGGcUUGa -3'
miRNA:   3'- cGCUGCACGUGGC-GAA-GGaCCaGACg -5'
14260 3' -55.9 NC_003521.1 + 132636 0.66 0.955245
Target:  5'- gGCGGCG-GCGCCaccggcgguucuGCUUCCUcGUCUu- -3'
miRNA:   3'- -CGCUGCaCGUGG------------CGAAGGAcCAGAcg -5'
14260 3' -55.9 NC_003521.1 + 47447 0.66 0.9623
Target:  5'- uGCaGcCGgGCGCCGCacUCCUGGUCg-- -3'
miRNA:   3'- -CG-CuGCaCGUGGCGa-AGGACCAGacg -5'
14260 3' -55.9 NC_003521.1 + 169009 0.66 0.971371
Target:  5'- gGCGACGgggccgGCACgaucuugacgugCGUgacgUCCUGGUCguccggggggaUGCg -3'
miRNA:   3'- -CGCUGCa-----CGUG------------GCGa---AGGACCAG-----------ACG- -5'
14260 3' -55.9 NC_003521.1 + 174515 0.66 0.968543
Target:  5'- cGCGAUGgccGCGCUGgUUCCauuagUGGUCUu- -3'
miRNA:   3'- -CGCUGCa--CGUGGCgAAGG-----ACCAGAcg -5'
14260 3' -55.9 NC_003521.1 + 171203 0.66 0.9623
Target:  5'- aUGACGUGCGCCGCUgacgGG-CUa- -3'
miRNA:   3'- cGCUGCACGUGGCGAaggaCCaGAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.