miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 3' -55.9 NC_003521.1 + 23282 1.14 0.002311
Target:  5'- aGCGACGUGCACCGCUUCCUGGUCUGCa -3'
miRNA:   3'- -CGCUGCACGUGGCGAAGGACCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 64990 0.87 0.131746
Target:  5'- aCGACGUGCGCCGCUUCUUGGaCcGCg -3'
miRNA:   3'- cGCUGCACGUGGCGAAGGACCaGaCG- -5'
14260 3' -55.9 NC_003521.1 + 150675 0.79 0.361524
Target:  5'- gGCGGCG-GCGCCGCUgcUgCUGGgugCUGCu -3'
miRNA:   3'- -CGCUGCaCGUGGCGA--AgGACCa--GACG- -5'
14260 3' -55.9 NC_003521.1 + 169164 0.77 0.47075
Target:  5'- uGCGugGUGCGCCGCUccaacucggCCUcGGUCUuCa -3'
miRNA:   3'- -CGCugCACGUGGCGAa--------GGA-CCAGAcG- -5'
14260 3' -55.9 NC_003521.1 + 148948 0.76 0.507621
Target:  5'- cCGugGUcGCACCGCcgccgccgUCCUGGUCcGCc -3'
miRNA:   3'- cGCugCA-CGUGGCGa-------AGGACCAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 205864 0.76 0.520817
Target:  5'- cGCGaucuggccgaccucuGCGUGCGCCGCgacuaCgagGGUCUGCg -3'
miRNA:   3'- -CGC---------------UGCACGUGGCGaag--Ga--CCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 154251 0.74 0.610163
Target:  5'- uGCGGCGUGCcCUGCcUCCaguucuggcagaaGGUCUGCu -3'
miRNA:   3'- -CGCUGCACGuGGCGaAGGa------------CCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 170529 0.74 0.627946
Target:  5'- gGCGACcUGCACCGCUUucucuucggcgccgaCCUGcGcCUGCc -3'
miRNA:   3'- -CGCUGcACGUGGCGAA---------------GGAC-CaGACG- -5'
14260 3' -55.9 NC_003521.1 + 105324 0.73 0.663499
Target:  5'- cGCGACGU-CGCCGCUUUC-GGUUuuaugUGCg -3'
miRNA:   3'- -CGCUGCAcGUGGCGAAGGaCCAG-----ACG- -5'
14260 3' -55.9 NC_003521.1 + 127884 0.73 0.672353
Target:  5'- cGCGGCGUGCACagcggcaccgucuCGCUguugUCCUGGcagUGCg -3'
miRNA:   3'- -CGCUGCACGUG-------------GCGA----AGGACCag-ACG- -5'
14260 3' -55.9 NC_003521.1 + 11564 0.73 0.673335
Target:  5'- gGCGccguCGUGCGCCGgacUCUgcggGGUCUGCg -3'
miRNA:   3'- -CGCu---GCACGUGGCga-AGGa---CCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 37359 0.73 0.673335
Target:  5'- aCGACGgaGCGCUGCUUCUUGGUg-GCc -3'
miRNA:   3'- cGCUGCa-CGUGGCGAAGGACCAgaCG- -5'
14260 3' -55.9 NC_003521.1 + 156599 0.72 0.71036
Target:  5'- -gGugGUGCAgCGCggccucucgcgCCUGGUgCUGCg -3'
miRNA:   3'- cgCugCACGUgGCGaa---------GGACCA-GACG- -5'
14260 3' -55.9 NC_003521.1 + 22394 0.72 0.721888
Target:  5'- cCGugGUGcCGCCGCUgUCgCUGGccaugCUGCg -3'
miRNA:   3'- cGCugCAC-GUGGCGA-AG-GACCa----GACG- -5'
14260 3' -55.9 NC_003521.1 + 149343 0.72 0.739922
Target:  5'- uCGAgGUGCGCgaggucUGCUUCCUGcgcaccuGUCUGCg -3'
miRNA:   3'- cGCUgCACGUG------GCGAAGGAC-------CAGACG- -5'
14260 3' -55.9 NC_003521.1 + 73149 0.71 0.76864
Target:  5'- aGCGGCGgcgGCGCCGCcUC--GGcCUGCg -3'
miRNA:   3'- -CGCUGCa--CGUGGCGaAGgaCCaGACG- -5'
14260 3' -55.9 NC_003521.1 + 124978 0.71 0.776784
Target:  5'- -aGGCGUGCGCCGCccgCCUGagccagcGcCUGCu -3'
miRNA:   3'- cgCUGCACGUGGCGaa-GGAC-------CaGACG- -5'
14260 3' -55.9 NC_003521.1 + 183633 0.71 0.777683
Target:  5'- uGCGAUGacucccUGCGCCGCUUCgUG--CUGCg -3'
miRNA:   3'- -CGCUGC------ACGUGGCGAAGgACcaGACG- -5'
14260 3' -55.9 NC_003521.1 + 18447 0.71 0.777683
Target:  5'- cGCGGCcUGUGCCGCUUcgaCCgcgGG-CUGCg -3'
miRNA:   3'- -CGCUGcACGUGGCGAA---GGa--CCaGACG- -5'
14260 3' -55.9 NC_003521.1 + 232363 0.71 0.795397
Target:  5'- cGCGGCG-GCACCGCgaagcggaggUCCaccgucucgcgcUGG-CUGCg -3'
miRNA:   3'- -CGCUGCaCGUGGCGa---------AGG------------ACCaGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.