miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 3' -55.9 NC_003521.1 + 192458 0.69 0.888143
Target:  5'- gGCGGCG-GCGCCgGUUUCCaggacggcGGUCgGCu -3'
miRNA:   3'- -CGCUGCaCGUGG-CGAAGGa-------CCAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 134517 0.7 0.852673
Target:  5'- gGCGAUGcGCacgGCCGCcgCCUGGUugCUGUu -3'
miRNA:   3'- -CGCUGCaCG---UGGCGaaGGACCA--GACG- -5'
14260 3' -55.9 NC_003521.1 + 183917 0.69 0.857189
Target:  5'- aCGGCGcUGUACCGgUgcaacaccagggaCUUGGUCUGCg -3'
miRNA:   3'- cGCUGC-ACGUGGCgAa------------GGACCAGACG- -5'
14260 3' -55.9 NC_003521.1 + 194412 0.69 0.860161
Target:  5'- cGCc-CGU-CGCCGCUUCCUGGcCcGCg -3'
miRNA:   3'- -CGcuGCAcGUGGCGAAGGACCaGaCG- -5'
14260 3' -55.9 NC_003521.1 + 137666 0.69 0.860161
Target:  5'- cGCGcCGUGCGCgaCGagauccgCCUGGUgCUGCa -3'
miRNA:   3'- -CGCuGCACGUG--GCgaa----GGACCA-GACG- -5'
14260 3' -55.9 NC_003521.1 + 150040 0.69 0.867458
Target:  5'- cGCGACGccacgcUGCACCGggUggucaucgucgaCCUGGUCgagUGCg -3'
miRNA:   3'- -CGCUGC------ACGUGGCgaA------------GGACCAG---ACG- -5'
14260 3' -55.9 NC_003521.1 + 220513 0.69 0.881453
Target:  5'- aGCGugGUG-GCC---UCCUGGUgCUGCa -3'
miRNA:   3'- -CGCugCACgUGGcgaAGGACCA-GACG- -5'
14260 3' -55.9 NC_003521.1 + 119996 0.69 0.881453
Target:  5'- gGCGACaUGCGCCGCUggCUguaguugaucaGGUCgGCc -3'
miRNA:   3'- -CGCUGcACGUGGCGAagGA-----------CCAGaCG- -5'
14260 3' -55.9 NC_003521.1 + 126763 0.69 0.888143
Target:  5'- aGCGACGUGaaguCCgGCaggcCCUGGcgCUGCg -3'
miRNA:   3'- -CGCUGCACgu--GG-CGaa--GGACCa-GACG- -5'
14260 3' -55.9 NC_003521.1 + 88612 0.7 0.852673
Target:  5'- aGCcACGUGCGCCGUgaccucgUCCgGGUCacaGCc -3'
miRNA:   3'- -CGcUGCACGUGGCGa------AGGaCCAGa--CG- -5'
14260 3' -55.9 NC_003521.1 + 110016 0.7 0.844998
Target:  5'- -aGAUGUGCACCcgGCUcUCgUGGgcgcgCUGCg -3'
miRNA:   3'- cgCUGCACGUGG--CGA-AGgACCa----GACG- -5'
14260 3' -55.9 NC_003521.1 + 129314 0.7 0.837143
Target:  5'- aUGGCGUGCGCCGCcgCCgccagcccgcUGGUCa-- -3'
miRNA:   3'- cGCUGCACGUGGCGaaGG----------ACCAGacg -5'
14260 3' -55.9 NC_003521.1 + 150675 0.79 0.361524
Target:  5'- gGCGGCG-GCGCCGCUgcUgCUGGgugCUGCu -3'
miRNA:   3'- -CGCUGCaCGUGGCGA--AgGACCa--GACG- -5'
14260 3' -55.9 NC_003521.1 + 127884 0.73 0.672353
Target:  5'- cGCGGCGUGCACagcggcaccgucuCGCUguugUCCUGGcagUGCg -3'
miRNA:   3'- -CGCUGCACGUG-------------GCGA----AGGACCag-ACG- -5'
14260 3' -55.9 NC_003521.1 + 37359 0.73 0.673335
Target:  5'- aCGACGgaGCGCUGCUUCUUGGUg-GCc -3'
miRNA:   3'- cGCUGCa-CGUGGCGAAGGACCAgaCG- -5'
14260 3' -55.9 NC_003521.1 + 156599 0.72 0.71036
Target:  5'- -gGugGUGCAgCGCggccucucgcgCCUGGUgCUGCg -3'
miRNA:   3'- cgCugCACGUgGCGaa---------GGACCA-GACG- -5'
14260 3' -55.9 NC_003521.1 + 149343 0.72 0.739922
Target:  5'- uCGAgGUGCGCgaggucUGCUUCCUGcgcaccuGUCUGCg -3'
miRNA:   3'- cGCUgCACGUG------GCGAAGGAC-------CAGACG- -5'
14260 3' -55.9 NC_003521.1 + 73149 0.71 0.76864
Target:  5'- aGCGGCGgcgGCGCCGCcUC--GGcCUGCg -3'
miRNA:   3'- -CGCUGCa--CGUGGCGaAGgaCCaGACG- -5'
14260 3' -55.9 NC_003521.1 + 232363 0.71 0.795397
Target:  5'- cGCGGCG-GCACCGCgaagcggaggUCCaccgucucgcgcUGG-CUGCg -3'
miRNA:   3'- -CGCUGCaCGUGGCGa---------AGG------------ACCaGACG- -5'
14260 3' -55.9 NC_003521.1 + 187901 0.7 0.834752
Target:  5'- gGCGGCGgggGCAggucgaucagcagcUCGCgagagUCCUGGUC-GCg -3'
miRNA:   3'- -CGCUGCa--CGU--------------GGCGa----AGGACCAGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.