miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 5' -58.4 NC_003521.1 + 192907 0.66 0.889033
Target:  5'- -aGCAGCGCgaaGGCCGUcaGGGCCAu -3'
miRNA:   3'- gaUGUCGUGgcaCCGGUAcgUCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 201383 0.66 0.889033
Target:  5'- cCU-CGGCGCCG-GGCUcgGCcGGCa- -3'
miRNA:   3'- -GAuGUCGUGGCaCCGGuaCGuCCGgu -5'
14260 5' -58.4 NC_003521.1 + 217332 0.66 0.889033
Target:  5'- --uCAGCACgGUGGCgGacgGC-GGCCGg -3'
miRNA:   3'- gauGUCGUGgCACCGgUa--CGuCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 93322 0.66 0.889033
Target:  5'- gCUGguGCuuCGgGGCCGUGUuccucaucuGGGCCAc -3'
miRNA:   3'- -GAUguCGugGCaCCGGUACG---------UCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 39546 0.66 0.889033
Target:  5'- -cGCAGguCgGUGGCCccgacGCcGGCCAu -3'
miRNA:   3'- gaUGUCguGgCACCGGua---CGuCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 52679 0.66 0.889033
Target:  5'- -aGCGGCACCGgcaGCgUcgGCGGuGCCAg -3'
miRNA:   3'- gaUGUCGUGGCac-CG-GuaCGUC-CGGU- -5'
14260 5' -58.4 NC_003521.1 + 137695 0.66 0.889033
Target:  5'- gCUGCAGCACCGccgcgcgcUGcGCCAgcuuucGCcuGCCAc -3'
miRNA:   3'- -GAUGUCGUGGC--------AC-CGGUa-----CGucCGGU- -5'
14260 5' -58.4 NC_003521.1 + 27108 0.66 0.889033
Target:  5'- -gACGGCGCgcaGGCCgGUGCGGGCgAa -3'
miRNA:   3'- gaUGUCGUGgcaCCGG-UACGUCCGgU- -5'
14260 5' -58.4 NC_003521.1 + 239773 0.66 0.889033
Target:  5'- -cGCAGguCgGUGGCCccgacGCcGGCCAu -3'
miRNA:   3'- gaUGUCguGgCACCGGua---CGuCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 163061 0.66 0.889033
Target:  5'- gUGCGGCACuaCGUGaagaGCCAcGCcgAGGCCGg -3'
miRNA:   3'- gAUGUCGUG--GCAC----CGGUaCG--UCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 124994 0.66 0.882347
Target:  5'- -cGCAGCAgCGUcagGGUCAUguugcgcaGCAGGCUg -3'
miRNA:   3'- gaUGUCGUgGCA---CCGGUA--------CGUCCGGu -5'
14260 5' -58.4 NC_003521.1 + 150711 0.66 0.882347
Target:  5'- -gGCGGCgacuggcucucgGCCGUgGGCCAcGUccuGGGCCGg -3'
miRNA:   3'- gaUGUCG------------UGGCA-CCGGUaCG---UCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 76159 0.66 0.882347
Target:  5'- -cACGGCGCagGUacaGGUCGUcGCGGGCCu -3'
miRNA:   3'- gaUGUCGUGg-CA---CCGGUA-CGUCCGGu -5'
14260 5' -58.4 NC_003521.1 + 167047 0.66 0.882347
Target:  5'- -gGCAGCGgCGUGGCgCucaugacgccgGUGCcGGCCc -3'
miRNA:   3'- gaUGUCGUgGCACCG-G-----------UACGuCCGGu -5'
14260 5' -58.4 NC_003521.1 + 115714 0.66 0.882347
Target:  5'- -gACGGCgGCCGUGGugcCCAUcccGCAGcGCCu -3'
miRNA:   3'- gaUGUCG-UGGCACC---GGUA---CGUC-CGGu -5'
14260 5' -58.4 NC_003521.1 + 49686 0.66 0.882347
Target:  5'- -cGCGGCGCUGUcGCCGUcaGCcuGCCAg -3'
miRNA:   3'- gaUGUCGUGGCAcCGGUA--CGucCGGU- -5'
14260 5' -58.4 NC_003521.1 + 59889 0.66 0.882347
Target:  5'- aCUACGGCACCGc-GCCAccaucgaGC-GGCCGc -3'
miRNA:   3'- -GAUGUCGUGGCacCGGUa------CGuCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 39441 0.66 0.882347
Target:  5'- -gGCGGCGCCGUGGCUcc-CGGGg-- -3'
miRNA:   3'- gaUGUCGUGGCACCGGuacGUCCggu -5'
14260 5' -58.4 NC_003521.1 + 239668 0.66 0.882347
Target:  5'- -gGCGGCGCCGUGGCUcc-CGGGg-- -3'
miRNA:   3'- gaUGUCGUGGCACCGGuacGUCCggu -5'
14260 5' -58.4 NC_003521.1 + 35806 0.66 0.882347
Target:  5'- aCUACGGCGgCGUgggcgagaaccuGGCgGUGCGcGCCGa -3'
miRNA:   3'- -GAUGUCGUgGCA------------CCGgUACGUcCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.