miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14260 5' -58.4 NC_003521.1 + 88078 0.66 0.861057
Target:  5'- -gGCGGCGcCCGUGaCCA--CGGGCCAc -3'
miRNA:   3'- gaUGUCGU-GGCACcGGUacGUCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 125857 0.66 0.853565
Target:  5'- gUACAGCGCCuugGUGGCCGcGUccgugucguacGGGuCCAc -3'
miRNA:   3'- gAUGUCGUGG---CACCGGUaCG-----------UCC-GGU- -5'
14260 5' -58.4 NC_003521.1 + 84858 0.66 0.871218
Target:  5'- -cGCAGCACCGUacgguagaaGGCCGcccgGUccggguggcgcgaguAGGCCGu -3'
miRNA:   3'- gaUGUCGUGGCA---------CCGGUa---CG---------------UCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 174505 0.66 0.861057
Target:  5'- aCUGCAGgGCCGcgaUGGCCGcGCuGGUUc -3'
miRNA:   3'- -GAUGUCgUGGC---ACCGGUaCGuCCGGu -5'
14260 5' -58.4 NC_003521.1 + 201383 0.66 0.889033
Target:  5'- cCU-CGGCGCCG-GGCUcgGCcGGCa- -3'
miRNA:   3'- -GAuGUCGUGGCaCCGGuaCGuCCGgu -5'
14260 5' -58.4 NC_003521.1 + 126432 0.66 0.866186
Target:  5'- uCUGCAGCACCagcgacaccGGCgagaucuuguacagCAUGgAGGCCAg -3'
miRNA:   3'- -GAUGUCGUGGca-------CCG--------------GUACgUCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 67041 0.66 0.853565
Target:  5'- -gACGGUGuCCGUGGCCAUcgcGCAGaCCc -3'
miRNA:   3'- gaUGUCGU-GGCACCGGUA---CGUCcGGu -5'
14260 5' -58.4 NC_003521.1 + 129062 0.66 0.868355
Target:  5'- -cGCAGCACCGUG----UGCAuGGCCu -3'
miRNA:   3'- gaUGUCGUGGCACcgguACGU-CCGGu -5'
14260 5' -58.4 NC_003521.1 + 65715 0.66 0.853565
Target:  5'- -aGCGGCGCCGcGGCg--GCccuGGCCGg -3'
miRNA:   3'- gaUGUCGUGGCaCCGguaCGu--CCGGU- -5'
14260 5' -58.4 NC_003521.1 + 58719 0.66 0.861057
Target:  5'- -cGCAGCccACCGUcuccaggcGGCgGUGCAGcaGCCAc -3'
miRNA:   3'- gaUGUCG--UGGCA--------CCGgUACGUC--CGGU- -5'
14260 5' -58.4 NC_003521.1 + 80514 0.66 0.861057
Target:  5'- -cACGGCuCCGaUGGCCGUGCccaccGCCu -3'
miRNA:   3'- gaUGUCGuGGC-ACCGGUACGuc---CGGu -5'
14260 5' -58.4 NC_003521.1 + 17322 0.66 0.875453
Target:  5'- --cCAGCACCGUucuuacagacGGCgCAacgcgcUGguGGCCAa -3'
miRNA:   3'- gauGUCGUGGCA----------CCG-GU------ACguCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 61427 0.66 0.853565
Target:  5'- aUGCGGCACC-UGaGCgAgcggcUGCAGGUCAu -3'
miRNA:   3'- gAUGUCGUGGcAC-CGgU-----ACGUCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 219250 0.66 0.861057
Target:  5'- -aGCAGCGCCG-GGUagaGCAgGGCCc -3'
miRNA:   3'- gaUGUCGUGGCaCCGguaCGU-CCGGu -5'
14260 5' -58.4 NC_003521.1 + 32415 0.66 0.853565
Target:  5'- -aGCAGC-CCGUGGC---GCAcGGCCu -3'
miRNA:   3'- gaUGUCGuGGCACCGguaCGU-CCGGu -5'
14260 5' -58.4 NC_003521.1 + 110655 0.66 0.861057
Target:  5'- --cCGGCACgGUcacGGCCcgGUcGGCCAg -3'
miRNA:   3'- gauGUCGUGgCA---CCGGuaCGuCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 216124 0.66 0.868355
Target:  5'- -cGCGGCGCgGaGGCCGcgGCagaggaAGGCCAc -3'
miRNA:   3'- gaUGUCGUGgCaCCGGUa-CG------UCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 30935 0.66 0.868355
Target:  5'- -gGCAGuCGCCGU-GCCGUagGUAGuGCCAa -3'
miRNA:   3'- gaUGUC-GUGGCAcCGGUA--CGUC-CGGU- -5'
14260 5' -58.4 NC_003521.1 + 87757 0.66 0.853565
Target:  5'- --cCAGCugCGgacaGGUgGcGCAGGCCAg -3'
miRNA:   3'- gauGUCGugGCa---CCGgUaCGUCCGGU- -5'
14260 5' -58.4 NC_003521.1 + 167040 0.66 0.860316
Target:  5'- -gACGGCcaguCCGUGGUCAcacuuggucagguUGCGGGgCAc -3'
miRNA:   3'- gaUGUCGu---GGCACCGGU-------------ACGUCCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.