miRNA display CGI


Results 1 - 20 of 482 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14263 3' -62.5 NC_003521.1 + 168998 0.66 0.773845
Target:  5'- cACCGgCUGCGCcgUCucccucuguuguuuUGUGcGCGCGCCg -3'
miRNA:   3'- -UGGCgGGCGCGa-AGu-------------GCGC-CGUGCGG- -5'
14263 3' -62.5 NC_003521.1 + 139019 0.66 0.770372
Target:  5'- gACCGCCCccuGgGCUUCGUGC-GCGC-CCa -3'
miRNA:   3'- -UGGCGGG---CgCGAAGUGCGcCGUGcGG- -5'
14263 3' -62.5 NC_003521.1 + 14253 0.66 0.770372
Target:  5'- uGCUGCCCGa---UC-CGCGGCGCGaUCg -3'
miRNA:   3'- -UGGCGGGCgcgaAGuGCGCCGUGC-GG- -5'
14263 3' -62.5 NC_003521.1 + 133393 0.66 0.770372
Target:  5'- gGCgGUCCGCGCuUUCGCGuCGGCu---- -3'
miRNA:   3'- -UGgCGGGCGCG-AAGUGC-GCCGugcgg -5'
14263 3' -62.5 NC_003521.1 + 139419 0.66 0.770372
Target:  5'- aGCCGCaCGgGCUcUCcuGCGUGGC-CGUCa -3'
miRNA:   3'- -UGGCGgGCgCGA-AG--UGCGCCGuGCGG- -5'
14263 3' -62.5 NC_003521.1 + 35132 0.66 0.770372
Target:  5'- uUCG-CCGCGaCUgagCGCG-GGUGCGCCa -3'
miRNA:   3'- uGGCgGGCGC-GAa--GUGCgCCGUGCGG- -5'
14263 3' -62.5 NC_003521.1 + 114107 0.66 0.770372
Target:  5'- gACCGCgCCGCcucggaucuGC-UCAC-CGGCAuguuCGCCu -3'
miRNA:   3'- -UGGCG-GGCG---------CGaAGUGcGCCGU----GCGG- -5'
14263 3' -62.5 NC_003521.1 + 155713 0.66 0.770372
Target:  5'- uGCCGCCCGcCGCU----GCcGC-CGCCg -3'
miRNA:   3'- -UGGCGGGC-GCGAagugCGcCGuGCGG- -5'
14263 3' -62.5 NC_003521.1 + 109470 0.66 0.770372
Target:  5'- uGCCGCCgaugagcuUGCGaCggCACGgGGCgaaGCGCUg -3'
miRNA:   3'- -UGGCGG--------GCGC-GaaGUGCgCCG---UGCGG- -5'
14263 3' -62.5 NC_003521.1 + 77010 0.66 0.770372
Target:  5'- cGCCGUCCagGgGCagCAUGCGGUugAgGCCg -3'
miRNA:   3'- -UGGCGGG--CgCGaaGUGCGCCG--UgCGG- -5'
14263 3' -62.5 NC_003521.1 + 187614 0.66 0.770372
Target:  5'- cACgGCCUGCcgggcgagccggGCcgCGCGCcGCugGCCa -3'
miRNA:   3'- -UGgCGGGCG------------CGaaGUGCGcCGugCGG- -5'
14263 3' -62.5 NC_003521.1 + 138697 0.66 0.770372
Target:  5'- gGCCgugaGCCUGgGCggCACGgGcGCugGCUg -3'
miRNA:   3'- -UGG----CGGGCgCGaaGUGCgC-CGugCGG- -5'
14263 3' -62.5 NC_003521.1 + 138034 0.66 0.770372
Target:  5'- cGCUGCCgGCGC---ACGgGGCuguggguCGCCc -3'
miRNA:   3'- -UGGCGGgCGCGaagUGCgCCGu------GCGG- -5'
14263 3' -62.5 NC_003521.1 + 18726 0.66 0.769501
Target:  5'- uGCCGCUgGCgGCggCGauCGUGGCggcggugGCGCCg -3'
miRNA:   3'- -UGGCGGgCG-CGaaGU--GCGCCG-------UGCGG- -5'
14263 3' -62.5 NC_003521.1 + 118604 0.66 0.769501
Target:  5'- cGCCGgcaCCCGCGCUcgCAggcagcauggaguCGCgagGGCGuCGCCa -3'
miRNA:   3'- -UGGC---GGGCGCGAa-GU-------------GCG---CCGU-GCGG- -5'
14263 3' -62.5 NC_003521.1 + 53784 0.66 0.769501
Target:  5'- cCCGCCCGUuagccgcacuuuuGCUUCuuGgGGUugGgCa -3'
miRNA:   3'- uGGCGGGCG-------------CGAAGugCgCCGugCgG- -5'
14263 3' -62.5 NC_003521.1 + 103574 0.66 0.767755
Target:  5'- gUCGCCCGCGCagaagcugcgCACGUacuccuccacggugGGCACGgUg -3'
miRNA:   3'- uGGCGGGCGCGaa--------GUGCG--------------CCGUGCgG- -5'
14263 3' -62.5 NC_003521.1 + 171373 0.66 0.764253
Target:  5'- cCUGCCCuGCGCcUCGCGCaccugcgacuccaccGuggugguGCGCGCCg -3'
miRNA:   3'- uGGCGGG-CGCGaAGUGCG---------------C-------CGUGCGG- -5'
14263 3' -62.5 NC_003521.1 + 196585 0.66 0.761615
Target:  5'- -aCGCCCGaccuGCUcgccaaCACGgGGUACGCa -3'
miRNA:   3'- ugGCGGGCg---CGAa-----GUGCgCCGUGCGg -5'
14263 3' -62.5 NC_003521.1 + 197638 0.66 0.761615
Target:  5'- gGCCGCgaaCGUGU----UGCGGCACGUCc -3'
miRNA:   3'- -UGGCGg--GCGCGaaguGCGCCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.