miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14263 5' -56.4 NC_003521.1 + 121103 0.66 0.95592
Target:  5'- -gGGCCgggGCCaucccgcugaGGcUGGUGGACGCCGu -3'
miRNA:   3'- caCCGGa--CGGa---------CC-ACUACUUGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 113558 0.66 0.95592
Target:  5'- -cGuGCCgcGCCUGGgcgccAUGGACGCCGa -3'
miRNA:   3'- caC-CGGa-CGGACCac---UACUUGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 235224 0.66 0.952102
Target:  5'- uGUGGCuCUGggUGGUGAagGAAUACaCGGc -3'
miRNA:   3'- -CACCG-GACggACCACUa-CUUGUG-GCC- -5'
14263 5' -56.4 NC_003521.1 + 185132 0.66 0.948068
Target:  5'- -aGGCCgcccGCCaccgcaacugUGGUGAUuacGGGCACCGu -3'
miRNA:   3'- caCCGGa---CGG----------ACCACUA---CUUGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 38466 0.66 0.948068
Target:  5'- --cGUCUGggcUCUGGcGGUGGGCGCCGGc -3'
miRNA:   3'- cacCGGAC---GGACCaCUACUUGUGGCC- -5'
14263 5' -56.4 NC_003521.1 + 50973 0.66 0.948068
Target:  5'- aGUGGUaaguCUGCa-GGUucuuGAUGAGCugCGGa -3'
miRNA:   3'- -CACCG----GACGgaCCA----CUACUUGugGCC- -5'
14263 5' -56.4 NC_003521.1 + 37410 0.66 0.943816
Target:  5'- -gGGCCUugugcgacgGCCUGG-GAggcGugGCCGGg -3'
miRNA:   3'- caCCGGA---------CGGACCaCUac-UugUGGCC- -5'
14263 5' -56.4 NC_003521.1 + 87235 0.66 0.943816
Target:  5'- cUGGCgCUGCUgcugcaGGUGGUGGagcggcuguGCGCCGu -3'
miRNA:   3'- cACCG-GACGGa-----CCACUACU---------UGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 224423 0.66 0.939342
Target:  5'- -cGGCCagGCgCUGcGUGGUGGGCGagCGGu -3'
miRNA:   3'- caCCGGa-CG-GAC-CACUACUUGUg-GCC- -5'
14263 5' -56.4 NC_003521.1 + 156130 0.67 0.934646
Target:  5'- -aGGCCgGCCUGGaGGUGuGCACg-- -3'
miRNA:   3'- caCCGGaCGGACCaCUACuUGUGgcc -5'
14263 5' -56.4 NC_003521.1 + 187616 0.67 0.934646
Target:  5'- -cGGCCUGCCgGGcGAgccgGGccgcGCGCCGc -3'
miRNA:   3'- caCCGGACGGaCCaCUa---CU----UGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 143052 0.67 0.929725
Target:  5'- -cGaCCUGgaUGGUGGUGGugGCGCCGGu -3'
miRNA:   3'- caCcGGACggACCACUACU--UGUGGCC- -5'
14263 5' -56.4 NC_003521.1 + 159634 0.67 0.928714
Target:  5'- uUGGCCcagaucgccgagGCCUGGUGcGUGGACcaaCGGc -3'
miRNA:   3'- cACCGGa-----------CGGACCAC-UACUUGug-GCC- -5'
14263 5' -56.4 NC_003521.1 + 19905 0.67 0.92458
Target:  5'- -cGGCgUGCgggagcggCUGGUGGuccUGGACGCCGc -3'
miRNA:   3'- caCCGgACG--------GACCACU---ACUUGUGGCc -5'
14263 5' -56.4 NC_003521.1 + 16092 0.67 0.919211
Target:  5'- cUGGCC-GCCUGcGUcGgcGAGCACCa- -3'
miRNA:   3'- cACCGGaCGGAC-CA-CuaCUUGUGGcc -5'
14263 5' -56.4 NC_003521.1 + 59710 0.67 0.919211
Target:  5'- -gGGUC-GCCUGGUGGcgcaauucGAcACGCCGGa -3'
miRNA:   3'- caCCGGaCGGACCACUa-------CU-UGUGGCC- -5'
14263 5' -56.4 NC_003521.1 + 168172 0.67 0.919211
Target:  5'- -cGGCauaGUCUGcGUGAUGAGCuGCUGGc -3'
miRNA:   3'- caCCGga-CGGAC-CACUACUUG-UGGCC- -5'
14263 5' -56.4 NC_003521.1 + 129208 0.67 0.919211
Target:  5'- gGUGGUCUGgC-GcGUGGUGGGCAguCCGGc -3'
miRNA:   3'- -CACCGGACgGaC-CACUACUUGU--GGCC- -5'
14263 5' -56.4 NC_003521.1 + 197837 0.67 0.913617
Target:  5'- -cGGCC-GUCUgcaGGUcgucGGUGGGCGCCGGc -3'
miRNA:   3'- caCCGGaCGGA---CCA----CUACUUGUGGCC- -5'
14263 5' -56.4 NC_003521.1 + 175007 0.67 0.913617
Target:  5'- -cGGCCUGCUuguccagcaUGGUcuUGAACagggGCCGGc -3'
miRNA:   3'- caCCGGACGG---------ACCAcuACUUG----UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.