Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14264 | 3' | -46.6 | NC_003521.1 | + | 104953 | 0.67 | 0.99998 |
Target: 5'- gCUugGAGGAgcugacgacggaaGGGCUGAcguucccggUGCUCAUGg -3' miRNA: 3'- gGAugUUCCUg------------UUCGACU---------AUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 94203 | 0.67 | 0.999967 |
Target: 5'- cCCUugAAGacgacGACGGGCUcgugauaggGGUGCUCAUa -3' miRNA: 3'- -GGAugUUC-----CUGUUCGA---------CUAUGAGUAc -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 106212 | 0.68 | 0.999922 |
Target: 5'- cCCU-CGGGGAUguagAGGCUGAUGCcCAg- -3' miRNA: 3'- -GGAuGUUCCUG----UUCGACUAUGaGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 170864 | 0.68 | 0.999897 |
Target: 5'- uUCUccGCGGGGGCGGGCgcgGGUGgUCAg- -3' miRNA: 3'- -GGA--UGUUCCUGUUCGa--CUAUgAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 181763 | 0.68 | 0.999866 |
Target: 5'- gCCgACGAGGACAacgAGCUGGagacggcGCUCAa- -3' miRNA: 3'- -GGaUGUUCCUGU---UCGACUa------UGAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 59791 | 0.69 | 0.999828 |
Target: 5'- gCCUuccGCAAGGACAccgacacggcGCUGGaccgcgugcUGCUCAUGu -3' miRNA: 3'- -GGA---UGUUCCUGUu---------CGACU---------AUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 202459 | 0.69 | 0.999779 |
Target: 5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3' miRNA: 3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 2231 | 0.69 | 0.999779 |
Target: 5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3' miRNA: 3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 151395 | 0.69 | 0.99972 |
Target: 5'- uUCUGCGGGGACGGGUaGggACggCGUGu -3' miRNA: 3'- -GGAUGUUCCUGUUCGaCuaUGa-GUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 94119 | 0.69 | 0.999646 |
Target: 5'- uCCUGacggAAGGACGAGCgcaccGUGCUCAg- -3' miRNA: 3'- -GGAUg---UUCCUGUUCGac---UAUGAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 28157 | 0.69 | 0.999556 |
Target: 5'- gCUGCccgucuGGGGCAuGCUGAUACccugCAUGc -3' miRNA: 3'- gGAUGu-----UCCUGUuCGACUAUGa---GUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 63572 | 0.7 | 0.999156 |
Target: 5'- aCCUGgGuGGAUGAGCUGAUGCg---- -3' miRNA: 3'- -GGAUgUuCCUGUUCGACUAUGaguac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 119843 | 0.71 | 0.998171 |
Target: 5'- uCCgACGAGGACGAGCUGGcggACcgCAa- -3' miRNA: 3'- -GGaUGUUCCUGUUCGACUa--UGa-GUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 106263 | 0.71 | 0.998171 |
Target: 5'- cCCUACcuGGACGAGCUGcgcaucGC-CGUGg -3' miRNA: 3'- -GGAUGuuCCUGUUCGACua----UGaGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 208857 | 0.71 | 0.99781 |
Target: 5'- uUUugGGGGACAcaGGCgUGAUAuCUCAUGu -3' miRNA: 3'- gGAugUUCCUGU--UCG-ACUAU-GAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 113065 | 0.71 | 0.997392 |
Target: 5'- aCUACGAGGAgAcGCUGcgGCUCu-- -3' miRNA: 3'- gGAUGUUCCUgUuCGACuaUGAGuac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 218924 | 0.72 | 0.99691 |
Target: 5'- aCUGCGucaGCAGGCUguaGAUGCUCAUGa -3' miRNA: 3'- gGAUGUuccUGUUCGA---CUAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 184857 | 0.73 | 0.993269 |
Target: 5'- cCCUGCAcaucggcguGGugGGGCUGcacacgGUGCUCAUGc -3' miRNA: 3'- -GGAUGUu--------CCugUUCGAC------UAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 229159 | 0.73 | 0.992237 |
Target: 5'- --cGCGGGGauagGCAGGCUGAUGUUCAUGu -3' miRNA: 3'- ggaUGUUCC----UGUUCGACUAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 181923 | 0.73 | 0.989798 |
Target: 5'- uCCUGCGcauGGaGACGGGCUGcgACUCGc- -3' miRNA: 3'- -GGAUGU---UC-CUGUUCGACuaUGAGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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