miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 5' -58.2 NC_003521.1 + 166245 0.66 0.848566
Target:  5'- aUGCC-GCCCGGCGaGCgGGCCgugcUCAc -3'
miRNA:   3'- -ACGGaCGGGUUGUgCGaCCGGa---AGUa -5'
14264 5' -58.2 NC_003521.1 + 214563 0.66 0.848566
Target:  5'- gUGCCUgggGUgCAGCAgCGCUGGCgUUCc- -3'
miRNA:   3'- -ACGGA---CGgGUUGU-GCGACCGgAAGua -5'
14264 5' -58.2 NC_003521.1 + 72283 0.67 0.84068
Target:  5'- cGCCaGCgCCGccgcCGCGCUGGCCgcCAg -3'
miRNA:   3'- aCGGaCG-GGUu---GUGCGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 97352 0.67 0.84068
Target:  5'- gUGCUUGCgCGcgaucuugagcACGCGCUGGCggUCGa -3'
miRNA:   3'- -ACGGACGgGU-----------UGUGCGACCGgaAGUa -5'
14264 5' -58.2 NC_003521.1 + 216400 0.67 0.84068
Target:  5'- cGCCgGCCCcuGCGcCGuCUGGCUUUCu- -3'
miRNA:   3'- aCGGaCGGGu-UGU-GC-GACCGGAAGua -5'
14264 5' -58.2 NC_003521.1 + 196503 0.67 0.832613
Target:  5'- aGCUUGCCCAGCAC-CUG--CUUCAg -3'
miRNA:   3'- aCGGACGGGUUGUGcGACcgGAAGUa -5'
14264 5' -58.2 NC_003521.1 + 85419 0.67 0.832613
Target:  5'- gGCCuccggUGCCCAGCccccCGCcGGCCUcgUCGUc -3'
miRNA:   3'- aCGG-----ACGGGUUGu---GCGaCCGGA--AGUA- -5'
14264 5' -58.2 NC_003521.1 + 39446 0.67 0.832613
Target:  5'- gGCCgaGCCCGGCGC-CgagGGCCgcgUCGa -3'
miRNA:   3'- aCGGa-CGGGUUGUGcGa--CCGGa--AGUa -5'
14264 5' -58.2 NC_003521.1 + 191523 0.67 0.824371
Target:  5'- cGaCCggggcGCUCGACGCGCUGGCaUUUAUg -3'
miRNA:   3'- aC-GGa----CGGGUUGUGCGACCGgAAGUA- -5'
14264 5' -58.2 NC_003521.1 + 55845 0.67 0.824371
Target:  5'- gGCCgGCCUugcacaggucCACGCUGGCCcgCAc -3'
miRNA:   3'- aCGGaCGGGuu--------GUGCGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 59718 0.67 0.824371
Target:  5'- cGCCgugGCCgAGCugGUggacaUGGCCUaUCAg -3'
miRNA:   3'- aCGGa--CGGgUUGugCG-----ACCGGA-AGUa -5'
14264 5' -58.2 NC_003521.1 + 133730 0.67 0.815961
Target:  5'- gGCaggagaUGCUCggUAUGCUGGCCggCAg -3'
miRNA:   3'- aCGg-----ACGGGuuGUGCGACCGGaaGUa -5'
14264 5' -58.2 NC_003521.1 + 87372 0.67 0.815961
Target:  5'- gGCCUG-CgAGC-CGCUGGCCUaCGa -3'
miRNA:   3'- aCGGACgGgUUGuGCGACCGGAaGUa -5'
14264 5' -58.2 NC_003521.1 + 114350 0.67 0.815961
Target:  5'- cUGCaCUcGgUCAugACGCUGGCCUcCAUg -3'
miRNA:   3'- -ACG-GA-CgGGUugUGCGACCGGAaGUA- -5'
14264 5' -58.2 NC_003521.1 + 216597 0.67 0.815961
Target:  5'- cGCCcgcUGCCCAACcCGCUGGUg----- -3'
miRNA:   3'- aCGG---ACGGGUUGuGCGACCGgaagua -5'
14264 5' -58.2 NC_003521.1 + 71405 0.67 0.815961
Target:  5'- cGCCUGCUggccuaCGGCGUGCUGGCgUUCc- -3'
miRNA:   3'- aCGGACGG------GUUGUGCGACCGgAAGua -5'
14264 5' -58.2 NC_003521.1 + 74153 0.67 0.807391
Target:  5'- cGCCacgggGCCCAgguGC-CGCUGGCCg---- -3'
miRNA:   3'- aCGGa----CGGGU---UGuGCGACCGGaagua -5'
14264 5' -58.2 NC_003521.1 + 130476 0.67 0.807391
Target:  5'- gUGCUgGCCCAGCuacaccgcgaGCGC-GGCCgcgUCAUg -3'
miRNA:   3'- -ACGGaCGGGUUG----------UGCGaCCGGa--AGUA- -5'
14264 5' -58.2 NC_003521.1 + 113056 0.67 0.798668
Target:  5'- cGCC-GCCCGACuacgaggagACGCUgcGGCuCUUCAa -3'
miRNA:   3'- aCGGaCGGGUUG---------UGCGA--CCG-GAAGUa -5'
14264 5' -58.2 NC_003521.1 + 73169 0.67 0.798668
Target:  5'- gGCCUGCgaCCugGACGCggaGCUGGCCggCAUc -3'
miRNA:   3'- aCGGACG--GG--UUGUG---CGACCGGaaGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.