Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14266 | 3' | -44.8 | NC_003521.1 | + | 225651 | 0.66 | 1 |
Target: 5'- -cCuuGGAAUUUCGUgGCGgaUAGUAACa -3' miRNA: 3'- cuGcgUCUUAAAGCAaCGC--AUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 121397 | 0.66 | 1 |
Target: 5'- uGAUGguGAAgc-CGUUGCGcUGGUGcuuGCg -3' miRNA: 3'- -CUGCguCUUaaaGCAACGC-AUCAU---UG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 61801 | 0.66 | 1 |
Target: 5'- gGAUGCGGAAaagaCGUUGCGUGa---- -3' miRNA: 3'- -CUGCGUCUUaaa-GCAACGCAUcauug -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 213265 | 0.66 | 1 |
Target: 5'- gGAgGCGGGuagUUCGUcGCGaauGUAACg -3' miRNA: 3'- -CUgCGUCUua-AAGCAaCGCau-CAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 17022 | 0.66 | 1 |
Target: 5'- cGGCGCAGGcccgUCGUcugGCGgcccacggcGGUAACg -3' miRNA: 3'- -CUGCGUCUuaa-AGCAa--CGCa--------UCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 217636 | 0.66 | 1 |
Target: 5'- cACGCAGGuucUCGUuagauUGCugGUGGUGACc -3' miRNA: 3'- cUGCGUCUuaaAGCA-----ACG--CAUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 164199 | 0.66 | 1 |
Target: 5'- gGAgGCGGAAcggCGggGCGgcggUGGUAGCg -3' miRNA: 3'- -CUgCGUCUUaaaGCaaCGC----AUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 137516 | 0.67 | 1 |
Target: 5'- aGCGCcugcuGGAGUacCGgcGCGUGGUGGCc -3' miRNA: 3'- cUGCG-----UCUUAaaGCaaCGCAUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 136856 | 0.67 | 1 |
Target: 5'- aGACGCAGAAaUgcacggacUCGcgGCG-GGUGGCg -3' miRNA: 3'- -CUGCGUCUUaA--------AGCaaCGCaUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 107250 | 0.67 | 0.999999 |
Target: 5'- aGCGCGGGAUgUCGcucUGaCGUAGgcGCu -3' miRNA: 3'- cUGCGUCUUAaAGCa--AC-GCAUCauUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 173521 | 0.67 | 0.999999 |
Target: 5'- cGAUGCAGAAc-UCGUcggGCGUcAGgcGCa -3' miRNA: 3'- -CUGCGUCUUaaAGCAa--CGCA-UCauUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 36314 | 0.67 | 0.999999 |
Target: 5'- gGGCGCAcccucagUCGggGCGUGGgGACa -3' miRNA: 3'- -CUGCGUcuuaa--AGCaaCGCAUCaUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 179823 | 0.68 | 0.999997 |
Target: 5'- aGGCGguGAGUUcgUCGUacacgGUcauGUAGUAACg -3' miRNA: 3'- -CUGCguCUUAA--AGCAa----CG---CAUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 153394 | 0.68 | 0.999994 |
Target: 5'- aGCGCAGGAUcuccUCGUgcaggugcgccaccgGCGUGGUcAGCa -3' miRNA: 3'- cUGCGUCUUAa---AGCAa--------------CGCAUCA-UUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 214685 | 0.69 | 0.999987 |
Target: 5'- aGACGCGGAAgaccacgaCGUUGCGUuGcAGCc -3' miRNA: 3'- -CUGCGUCUUaaa-----GCAACGCAuCaUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 228719 | 0.69 | 0.999983 |
Target: 5'- -uCGCAGAucAUguugUCGggcUGCGUGGUGAg -3' miRNA: 3'- cuGCGUCU--UAa---AGCa--ACGCAUCAUUg -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 222784 | 0.69 | 0.999968 |
Target: 5'- cGGCGCAGAGgaacUUCugcaCGUGGUAGCg -3' miRNA: 3'- -CUGCGUCUUa---AAGcaacGCAUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 104172 | 0.72 | 0.999133 |
Target: 5'- cGGCGCGGGucgcacggCGUUGCgGUAGUAGa -3' miRNA: 3'- -CUGCGUCUuaaa----GCAACG-CAUCAUUg -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 91563 | 0.78 | 0.960162 |
Target: 5'- cGACGCGGAAcgacauggccacgUCGUagGCGUAGUAGCc -3' miRNA: 3'- -CUGCGUCUUaa-----------AGCAa-CGCAUCAUUG- -5' |
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14266 | 3' | -44.8 | NC_003521.1 | + | 20134 | 0.94 | 0.325762 |
Target: 5'- cGACGCAGAAUUUCGUguCGUAGUAACg -3' miRNA: 3'- -CUGCGUCUUAAAGCAacGCAUCAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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