miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 3' -44.8 NC_003521.1 + 225651 0.66 1
Target:  5'- -cCuuGGAAUUUCGUgGCGgaUAGUAACa -3'
miRNA:   3'- cuGcgUCUUAAAGCAaCGC--AUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 121397 0.66 1
Target:  5'- uGAUGguGAAgc-CGUUGCGcUGGUGcuuGCg -3'
miRNA:   3'- -CUGCguCUUaaaGCAACGC-AUCAU---UG- -5'
14266 3' -44.8 NC_003521.1 + 61801 0.66 1
Target:  5'- gGAUGCGGAAaagaCGUUGCGUGa---- -3'
miRNA:   3'- -CUGCGUCUUaaa-GCAACGCAUcauug -5'
14266 3' -44.8 NC_003521.1 + 213265 0.66 1
Target:  5'- gGAgGCGGGuagUUCGUcGCGaauGUAACg -3'
miRNA:   3'- -CUgCGUCUua-AAGCAaCGCau-CAUUG- -5'
14266 3' -44.8 NC_003521.1 + 17022 0.66 1
Target:  5'- cGGCGCAGGcccgUCGUcugGCGgcccacggcGGUAACg -3'
miRNA:   3'- -CUGCGUCUuaa-AGCAa--CGCa--------UCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 217636 0.66 1
Target:  5'- cACGCAGGuucUCGUuagauUGCugGUGGUGACc -3'
miRNA:   3'- cUGCGUCUuaaAGCA-----ACG--CAUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 164199 0.66 1
Target:  5'- gGAgGCGGAAcggCGggGCGgcggUGGUAGCg -3'
miRNA:   3'- -CUgCGUCUUaaaGCaaCGC----AUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 137516 0.67 1
Target:  5'- aGCGCcugcuGGAGUacCGgcGCGUGGUGGCc -3'
miRNA:   3'- cUGCG-----UCUUAaaGCaaCGCAUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 136856 0.67 1
Target:  5'- aGACGCAGAAaUgcacggacUCGcgGCG-GGUGGCg -3'
miRNA:   3'- -CUGCGUCUUaA--------AGCaaCGCaUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 107250 0.67 0.999999
Target:  5'- aGCGCGGGAUgUCGcucUGaCGUAGgcGCu -3'
miRNA:   3'- cUGCGUCUUAaAGCa--AC-GCAUCauUG- -5'
14266 3' -44.8 NC_003521.1 + 173521 0.67 0.999999
Target:  5'- cGAUGCAGAAc-UCGUcggGCGUcAGgcGCa -3'
miRNA:   3'- -CUGCGUCUUaaAGCAa--CGCA-UCauUG- -5'
14266 3' -44.8 NC_003521.1 + 36314 0.67 0.999999
Target:  5'- gGGCGCAcccucagUCGggGCGUGGgGACa -3'
miRNA:   3'- -CUGCGUcuuaa--AGCaaCGCAUCaUUG- -5'
14266 3' -44.8 NC_003521.1 + 179823 0.68 0.999997
Target:  5'- aGGCGguGAGUUcgUCGUacacgGUcauGUAGUAACg -3'
miRNA:   3'- -CUGCguCUUAA--AGCAa----CG---CAUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 153394 0.68 0.999994
Target:  5'- aGCGCAGGAUcuccUCGUgcaggugcgccaccgGCGUGGUcAGCa -3'
miRNA:   3'- cUGCGUCUUAa---AGCAa--------------CGCAUCA-UUG- -5'
14266 3' -44.8 NC_003521.1 + 214685 0.69 0.999987
Target:  5'- aGACGCGGAAgaccacgaCGUUGCGUuGcAGCc -3'
miRNA:   3'- -CUGCGUCUUaaa-----GCAACGCAuCaUUG- -5'
14266 3' -44.8 NC_003521.1 + 228719 0.69 0.999983
Target:  5'- -uCGCAGAucAUguugUCGggcUGCGUGGUGAg -3'
miRNA:   3'- cuGCGUCU--UAa---AGCa--ACGCAUCAUUg -5'
14266 3' -44.8 NC_003521.1 + 222784 0.69 0.999968
Target:  5'- cGGCGCAGAGgaacUUCugcaCGUGGUAGCg -3'
miRNA:   3'- -CUGCGUCUUa---AAGcaacGCAUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 104172 0.72 0.999133
Target:  5'- cGGCGCGGGucgcacggCGUUGCgGUAGUAGa -3'
miRNA:   3'- -CUGCGUCUuaaa----GCAACG-CAUCAUUg -5'
14266 3' -44.8 NC_003521.1 + 91563 0.78 0.960162
Target:  5'- cGACGCGGAAcgacauggccacgUCGUagGCGUAGUAGCc -3'
miRNA:   3'- -CUGCGUCUUaa-----------AGCAa-CGCAUCAUUG- -5'
14266 3' -44.8 NC_003521.1 + 20134 0.94 0.325762
Target:  5'- cGACGCAGAAUUUCGUguCGUAGUAACg -3'
miRNA:   3'- -CUGCGUCUUAAAGCAacGCAUCAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.