miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14266 5' -60.5 NC_003521.1 + 129562 0.73 0.50758
Target:  5'- aCGGCGGgccCGACGAUGGcugcuccgCCGCGcCGCGc -3'
miRNA:   3'- -GCUGCC---GCUGCUGCCa-------GGCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 215630 0.73 0.498704
Target:  5'- uGuCGGUGAgGACGGggcUCCGCaugGUCGCGg -3'
miRNA:   3'- gCuGCCGCUgCUGCC---AGGCG---CAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 92025 0.73 0.498704
Target:  5'- gCGGCGGCGGCgGugGGUCCGgGggucccCGgGg -3'
miRNA:   3'- -GCUGCCGCUG-CugCCAGGCgCa-----GCgC- -5'
14266 5' -60.5 NC_003521.1 + 186817 0.73 0.49782
Target:  5'- gCGugGGCGACcagaucuGACGGUCCuGCGaaUgGCGg -3'
miRNA:   3'- -GCugCCGCUG-------CUGCCAGG-CGC--AgCGC- -5'
14266 5' -60.5 NC_003521.1 + 191086 0.73 0.489898
Target:  5'- uGGUGGCGGCGGCGGgCUGCGUCuCGu -3'
miRNA:   3'- gCUGCCGCUGCUGCCaGGCGCAGcGC- -5'
14266 5' -60.5 NC_003521.1 + 86655 0.72 0.571347
Target:  5'- uGGCGGcCGACGACaGGUUgaggaucagCGCGUCGUc -3'
miRNA:   3'- gCUGCC-GCUGCUG-CCAG---------GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 118003 0.72 0.543709
Target:  5'- aCGACGGUaGCGGCGG--CGUGUCGCu -3'
miRNA:   3'- -GCUGCCGcUGCUGCCagGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 74695 0.72 0.552877
Target:  5'- -aGCaGCGACGGCGGcgCCGCGgcaGCGg -3'
miRNA:   3'- gcUGcCGCUGCUGCCa-GGCGCag-CGC- -5'
14266 5' -60.5 NC_003521.1 + 140566 0.72 0.562092
Target:  5'- gCGGCGGCGGCGACaGcUCGuCGUCGgGc -3'
miRNA:   3'- -GCUGCCGCUGCUGcCaGGC-GCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 91502 0.72 0.551958
Target:  5'- uCGAagaGGCGugagaccACGGCGG-CCGCGUCGUc -3'
miRNA:   3'- -GCUg--CCGC-------UGCUGCCaGGCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 74903 0.72 0.552877
Target:  5'- aGACGGUGGCGGCGGUggagucggCC-CGgcagCGCGg -3'
miRNA:   3'- gCUGCCGCUGCUGCCA--------GGcGCa---GCGC- -5'
14266 5' -60.5 NC_003521.1 + 36984 0.72 0.571347
Target:  5'- uCGGCGGCGacauccGCGACGaGg--GCGUCGCGg -3'
miRNA:   3'- -GCUGCCGC------UGCUGC-CaggCGCAGCGC- -5'
14266 5' -60.5 NC_003521.1 + 169452 0.72 0.565789
Target:  5'- gCGuCGGCGGCGGCGGguucgucgccaggCGCGUCGUc -3'
miRNA:   3'- -GCuGCCGCUGCUGCCag-----------GCGCAGCGc -5'
14266 5' -60.5 NC_003521.1 + 111079 0.72 0.543709
Target:  5'- gGGCGGCGAaGACGGcgcggacgcgcUCgGCGUCGaCGg -3'
miRNA:   3'- gCUGCCGCUgCUGCC-----------AGgCGCAGC-GC- -5'
14266 5' -60.5 NC_003521.1 + 141359 0.72 0.580638
Target:  5'- aCGGguGCGGCGGCGGUCgGUGaCGCGg -3'
miRNA:   3'- -GCUgcCGCUGCUGCCAGgCGCaGCGC- -5'
14266 5' -60.5 NC_003521.1 + 131241 0.71 0.59931
Target:  5'- gCGACGGCGAugcCGACGGga-GCGgCGCu -3'
miRNA:   3'- -GCUGCCGCU---GCUGCCaggCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 11250 0.71 0.59931
Target:  5'- uGACGGCGaACGuCGaGcCCGCGUUGgGg -3'
miRNA:   3'- gCUGCCGC-UGCuGC-CaGGCGCAGCgC- -5'
14266 5' -60.5 NC_003521.1 + 196725 0.71 0.589961
Target:  5'- cCGGCGGCGACGGUGGUggCgGCGgCGCc -3'
miRNA:   3'- -GCUGCCGCUGCUGCCA--GgCGCaGCGc -5'
14266 5' -60.5 NC_003521.1 + 180935 0.71 0.589961
Target:  5'- uCGAUGGUGGCG-CGGUgCCGUaGUcCGCGg -3'
miRNA:   3'- -GCUGCCGCUGCuGCCA-GGCG-CA-GCGC- -5'
14266 5' -60.5 NC_003521.1 + 76682 0.71 0.59931
Target:  5'- gCGAUGaagcCGACGACgGGUCCGUGUaGCGg -3'
miRNA:   3'- -GCUGCc---GCUGCUG-CCAGGCGCAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.