miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 18099 1.11 0.003449
Target:  5'- cGCGAGAUGAGCGGCCUCAACCUGGUGa -3'
miRNA:   3'- -CGCUCUACUCGCCGGAGUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 156595 0.8 0.296989
Target:  5'- cCGAGGUGGugcagcGCGGCCUCucgcGCCUGGUGc -3'
miRNA:   3'- cGCUCUACU------CGCCGGAGu---UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 125108 0.73 0.676143
Target:  5'- uGCGGGAUGGGCaccacGGCCgccgUCAGCUUGGc- -3'
miRNA:   3'- -CGCUCUACUCG-----CCGG----AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 21924 0.73 0.686001
Target:  5'- uCGAGAcccuggcGGGCGGCCUCGGgCUGGa- -3'
miRNA:   3'- cGCUCUa------CUCGCCGGAGUUgGACCac -5'
14269 3' -56 NC_003521.1 + 131388 0.72 0.70558
Target:  5'- cCGAGGUGAcgGGCgUCAGCCUGGa- -3'
miRNA:   3'- cGCUCUACUcgCCGgAGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 74511 0.71 0.743969
Target:  5'- uGCuGGAgcaGAGCGGCaUCAAgCUGGUGg -3'
miRNA:   3'- -CGcUCUa--CUCGCCGgAGUUgGACCAC- -5'
14269 3' -56 NC_003521.1 + 168773 0.71 0.743969
Target:  5'- -gGAGAUGAGCaagGGUCUgCAccaggACCUGGUGc -3'
miRNA:   3'- cgCUCUACUCG---CCGGA-GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 153019 0.71 0.78981
Target:  5'- gGCGugguaccuaaGGAUGAGCgcuacgGGCCUCAgcACCUGGc- -3'
miRNA:   3'- -CGC----------UCUACUCG------CCGGAGU--UGGACCac -5'
14269 3' -56 NC_003521.1 + 153708 0.7 0.798609
Target:  5'- cGCGAcgagguGGUGGGCgccacgcaGGCCuUCAACCUGGa- -3'
miRNA:   3'- -CGCU------CUACUCG--------CCGG-AGUUGGACCac -5'
14269 3' -56 NC_003521.1 + 135938 0.7 0.815771
Target:  5'- cGCGGGAUGuGCGacGCCUCGggcGCCUGcGa- -3'
miRNA:   3'- -CGCUCUACuCGC--CGGAGU---UGGAC-Cac -5'
14269 3' -56 NC_003521.1 + 164454 0.7 0.82412
Target:  5'- cGCGGGccUGAGCaugaagGGCgUgGACCUGGUGc -3'
miRNA:   3'- -CGCUCu-ACUCG------CCGgAgUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 184146 0.69 0.848148
Target:  5'- -----cUGGGCGGCUacugCGACCUGGUGc -3'
miRNA:   3'- cgcucuACUCGCCGGa---GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 12214 0.69 0.863252
Target:  5'- gGUGAGAUGAcGCGGCCccUCAugCUcugcGGg- -3'
miRNA:   3'- -CGCUCUACU-CGCCGG--AGUugGA----CCac -5'
14269 3' -56 NC_003521.1 + 151276 0.69 0.877568
Target:  5'- aGCGcGAcGAGUgGGCCcgCAGCCUGGg- -3'
miRNA:   3'- -CGCuCUaCUCG-CCGGa-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 158863 0.69 0.877568
Target:  5'- cGCGAGAccuGCaGCCUUAACUgcaUGGUGa -3'
miRNA:   3'- -CGCUCUacuCGcCGGAGUUGG---ACCAC- -5'
14269 3' -56 NC_003521.1 + 62081 0.69 0.880333
Target:  5'- cCGAGAcggacagacccugauUGAGCGGcCCUC-GCCaugGGUGa -3'
miRNA:   3'- cGCUCU---------------ACUCGCC-GGAGuUGGa--CCAC- -5'
14269 3' -56 NC_003521.1 + 105663 0.68 0.884418
Target:  5'- -gGGGGUGGGCGGCacgaUCAguuGCCcgauggGGUGg -3'
miRNA:   3'- cgCUCUACUCGCCGg---AGU---UGGa-----CCAC- -5'
14269 3' -56 NC_003521.1 + 198323 0.68 0.884418
Target:  5'- uGgGGGAUGGGCGGCUa-AACCUG-UGa -3'
miRNA:   3'- -CgCUCUACUCGCCGGagUUGGACcAC- -5'
14269 3' -56 NC_003521.1 + 114751 0.68 0.884418
Target:  5'- -gGGGGUGGcGCGGCCaCAGCgCUGGa- -3'
miRNA:   3'- cgCUCUACU-CGCCGGaGUUG-GACCac -5'
14269 3' -56 NC_003521.1 + 116487 0.68 0.891057
Target:  5'- gGCGAuGAaGAGCguccgugacGGCCUCuucuGCCUGGg- -3'
miRNA:   3'- -CGCU-CUaCUCG---------CCGGAGu---UGGACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.