Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14269 | 3' | -56 | NC_003521.1 | + | 5794 | 0.68 | 0.915435 |
Target: 5'- aUGAGAgGAGUacGGCCUCcgaGACCUaggGGUGg -3' miRNA: 3'- cGCUCUaCUCG--CCGGAG---UUGGA---CCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 12214 | 0.69 | 0.863252 |
Target: 5'- gGUGAGAUGAcGCGGCCccUCAugCUcugcGGg- -3' miRNA: 3'- -CGCUCUACU-CGCCGG--AGUugGA----CCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 14351 | 0.66 | 0.953437 |
Target: 5'- cGCGAccaguaccuGGUGcuGGUGGCCcaCAACCUGGa- -3' miRNA: 3'- -CGCU---------CUAC--UCGCCGGa-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 18099 | 1.11 | 0.003449 |
Target: 5'- cGCGAGAUGAGCGGCCUCAACCUGGUGa -3' miRNA: 3'- -CGCUCUACUCGCCGGAGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 19558 | 0.67 | 0.940865 |
Target: 5'- aUGAGcGUGuGCGGCUUCugcuGgCUGGUGu -3' miRNA: 3'- cGCUC-UACuCGCCGGAGu---UgGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 21924 | 0.73 | 0.686001 |
Target: 5'- uCGAGAcccuggcGGGCGGCCUCGGgCUGGa- -3' miRNA: 3'- cGCUCUa------CUCGCCGGAGUUgGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 40202 | 0.67 | 0.920972 |
Target: 5'- aGCu---UGAGCGGCUUC-ACCUGGa- -3' miRNA: 3'- -CGcucuACUCGCCGGAGuUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 60138 | 0.66 | 0.95305 |
Target: 5'- aGCGAGGaggugucGAGCacgcaGGCCUCGcgccaacGCCUGGa- -3' miRNA: 3'- -CGCUCUa------CUCG-----CCGGAGU-------UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 60250 | 0.66 | 0.945276 |
Target: 5'- uGCaGGAcuUGAucgacGUGGCCcaCGACCUGGUGg -3' miRNA: 3'- -CGcUCU--ACU-----CGCCGGa-GUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 62081 | 0.69 | 0.880333 |
Target: 5'- cCGAGAcggacagacccugauUGAGCGGcCCUC-GCCaugGGUGa -3' miRNA: 3'- cGCUCU---------------ACUCGCC-GGAGuUGGa--CCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 74511 | 0.71 | 0.743969 |
Target: 5'- uGCuGGAgcaGAGCGGCaUCAAgCUGGUGg -3' miRNA: 3'- -CGcUCUa--CUCGCCGgAGUUgGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 76214 | 0.66 | 0.957192 |
Target: 5'- gGUGGuAUGAGUGGCggCGGCC-GGUGg -3' miRNA: 3'- -CGCUcUACUCGCCGgaGUUGGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 77742 | 0.67 | 0.920972 |
Target: 5'- cCGAGGacGGGcCGGCCUCGGCgUGGc- -3' miRNA: 3'- cGCUCUa-CUC-GCCGGAGUUGgACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 80982 | 0.68 | 0.915435 |
Target: 5'- cGCGAGuagcAGCGGCCcuUCucCUUGGUGu -3' miRNA: 3'- -CGCUCuac-UCGCCGG--AGuuGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 87002 | 0.67 | 0.93623 |
Target: 5'- gGCGGuGAUGAG-GGCCaCGugCUGGaUGa -3' miRNA: 3'- -CGCU-CUACUCgCCGGaGUugGACC-AC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 88784 | 0.66 | 0.960735 |
Target: 5'- uGCG-GGUGaAGCaccGCUgCGGCCUGGUGa -3' miRNA: 3'- -CGCuCUAC-UCGc--CGGaGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 91524 | 0.67 | 0.920972 |
Target: 5'- -gGAGGUGGGCGgaGCgUCGACCgGGg- -3' miRNA: 3'- cgCUCUACUCGC--CGgAGUUGGaCCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 101735 | 0.68 | 0.903688 |
Target: 5'- gGCGAGAUGGGgaaGGCCggcaggucgugCGGCggaUGGUGg -3' miRNA: 3'- -CGCUCUACUCg--CCGGa----------GUUGg--ACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 102968 | 0.66 | 0.960735 |
Target: 5'- gGCGucggggcucuGGcgGGGCGGCC-CAGCCgcgGcGUGa -3' miRNA: 3'- -CGC----------UCuaCUCGCCGGaGUUGGa--C-CAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 105663 | 0.68 | 0.884418 |
Target: 5'- -gGGGGUGGGCGGCacgaUCAguuGCCcgauggGGUGg -3' miRNA: 3'- cgCUCUACUCGCCGg---AGU---UGGa-----CCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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