miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14269 3' -56 NC_003521.1 + 234828 0.67 0.920972
Target:  5'- uCGGGGUucGUGGCCgagagCAaguucACCUGGUGg -3'
miRNA:   3'- cGCUCUAcuCGCCGGa----GU-----UGGACCAC- -5'
14269 3' -56 NC_003521.1 + 137267 0.67 0.920972
Target:  5'- aGCGGGcaGAGCgggGGCCccagCGACCUGGa- -3'
miRNA:   3'- -CGCUCuaCUCG---CCGGa---GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 77742 0.67 0.920972
Target:  5'- cCGAGGacGGGcCGGCCUCGGCgUGGc- -3'
miRNA:   3'- cGCUCUa-CUC-GCCGGAGUUGgACCac -5'
14269 3' -56 NC_003521.1 + 174484 0.67 0.920972
Target:  5'- aGCGGGAuccaguugcUGccaGGCGGCCUCcacGGCUUGGa- -3'
miRNA:   3'- -CGCUCU---------AC---UCGCCGGAG---UUGGACCac -5'
14269 3' -56 NC_003521.1 + 91524 0.67 0.920972
Target:  5'- -gGAGGUGGGCGgaGCgUCGACCgGGg- -3'
miRNA:   3'- cgCUCUACUCGC--CGgAGUUGGaCCac -5'
14269 3' -56 NC_003521.1 + 5794 0.68 0.915435
Target:  5'- aUGAGAgGAGUacGGCCUCcgaGACCUaggGGUGg -3'
miRNA:   3'- cGCUCUaCUCG--CCGGAG---UUGGA---CCAC- -5'
14269 3' -56 NC_003521.1 + 80982 0.68 0.915435
Target:  5'- cGCGAGuagcAGCGGCCcuUCucCUUGGUGu -3'
miRNA:   3'- -CGCUCuac-UCGCCGG--AGuuGGACCAC- -5'
14269 3' -56 NC_003521.1 + 101735 0.68 0.903688
Target:  5'- gGCGAGAUGGGgaaGGCCggcaggucgugCGGCggaUGGUGg -3'
miRNA:   3'- -CGCUCUACUCg--CCGGa----------GUUGg--ACCAC- -5'
14269 3' -56 NC_003521.1 + 205973 0.68 0.903688
Target:  5'- aCGuGGUGGGCGGCuCUCAcucgcccuACCUGcUGa -3'
miRNA:   3'- cGCuCUACUCGCCG-GAGU--------UGGACcAC- -5'
14269 3' -56 NC_003521.1 + 116487 0.68 0.891057
Target:  5'- gGCGAuGAaGAGCguccgugacGGCCUCuucuGCCUGGg- -3'
miRNA:   3'- -CGCU-CUaCUCG---------CCGGAGu---UGGACCac -5'
14269 3' -56 NC_003521.1 + 190593 0.68 0.891057
Target:  5'- gGCGAG--GAGUGGCCccgCGACCUGa-- -3'
miRNA:   3'- -CGCUCuaCUCGCCGGa--GUUGGACcac -5'
14269 3' -56 NC_003521.1 + 198323 0.68 0.884418
Target:  5'- uGgGGGAUGGGCGGCUa-AACCUG-UGa -3'
miRNA:   3'- -CgCUCUACUCGCCGGagUUGGACcAC- -5'
14269 3' -56 NC_003521.1 + 105663 0.68 0.884418
Target:  5'- -gGGGGUGGGCGGCacgaUCAguuGCCcgauggGGUGg -3'
miRNA:   3'- cgCUCUACUCGCCGg---AGU---UGGa-----CCAC- -5'
14269 3' -56 NC_003521.1 + 114751 0.68 0.884418
Target:  5'- -gGGGGUGGcGCGGCCaCAGCgCUGGa- -3'
miRNA:   3'- cgCUCUACU-CGCCGGaGUUG-GACCac -5'
14269 3' -56 NC_003521.1 + 62081 0.69 0.880333
Target:  5'- cCGAGAcggacagacccugauUGAGCGGcCCUC-GCCaugGGUGa -3'
miRNA:   3'- cGCUCU---------------ACUCGCC-GGAGuUGGa--CCAC- -5'
14269 3' -56 NC_003521.1 + 158863 0.69 0.877568
Target:  5'- cGCGAGAccuGCaGCCUUAACUgcaUGGUGa -3'
miRNA:   3'- -CGCUCUacuCGcCGGAGUUGG---ACCAC- -5'
14269 3' -56 NC_003521.1 + 151276 0.69 0.877568
Target:  5'- aGCGcGAcGAGUgGGCCcgCAGCCUGGg- -3'
miRNA:   3'- -CGCuCUaCUCG-CCGGa-GUUGGACCac -5'
14269 3' -56 NC_003521.1 + 12214 0.69 0.863252
Target:  5'- gGUGAGAUGAcGCGGCCccUCAugCUcugcGGg- -3'
miRNA:   3'- -CGCUCUACU-CGCCGG--AGUugGA----CCac -5'
14269 3' -56 NC_003521.1 + 184146 0.69 0.848148
Target:  5'- -----cUGGGCGGCUacugCGACCUGGUGc -3'
miRNA:   3'- cgcucuACUCGCCGGa---GUUGGACCAC- -5'
14269 3' -56 NC_003521.1 + 164454 0.7 0.82412
Target:  5'- cGCGGGccUGAGCaugaagGGCgUgGACCUGGUGc -3'
miRNA:   3'- -CGCUCu-ACUCG------CCGgAgUUGGACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.