Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14269 | 3' | -56 | NC_003521.1 | + | 14351 | 0.66 | 0.953437 |
Target: 5'- cGCGAccaguaccuGGUGcuGGUGGCCcaCAACCUGGa- -3' miRNA: 3'- -CGCU---------CUAC--UCGCCGGa-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 223110 | 0.66 | 0.953437 |
Target: 5'- uGCGGGAUG-GCGGCCgucucgcgCAgcACCaGGa- -3' miRNA: 3'- -CGCUCUACuCGCCGGa-------GU--UGGaCCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 213439 | 0.66 | 0.956826 |
Target: 5'- aCGAGAUccccGUGGCCUgGccccccggcuggaGCCUGGUGc -3' miRNA: 3'- cGCUCUAcu--CGCCGGAgU-------------UGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 127384 | 0.66 | 0.957192 |
Target: 5'- uGCGuGAUGAaggGCGGCCaCAGgC-GGUGg -3' miRNA: 3'- -CGCuCUACU---CGCCGGaGUUgGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 76214 | 0.66 | 0.957192 |
Target: 5'- gGUGGuAUGAGUGGCggCGGCC-GGUGg -3' miRNA: 3'- -CGCUcUACUCGCCGgaGUUGGaCCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 88784 | 0.66 | 0.960735 |
Target: 5'- uGCG-GGUGaAGCaccGCUgCGGCCUGGUGa -3' miRNA: 3'- -CGCuCUAC-UCGc--CGGaGUUGGACCAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 102968 | 0.66 | 0.960735 |
Target: 5'- gGCGucggggcucuGGcgGGGCGGCC-CAGCCgcgGcGUGa -3' miRNA: 3'- -CGC----------UCuaCUCGCCGGaGUUGGa--C-CAC- -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 206145 | 0.66 | 0.962761 |
Target: 5'- cGCGcaGGAggacugccucuacGAGCuGGCCUcCGACCUGGg- -3' miRNA: 3'- -CGC--UCUa------------CUCG-CCGGA-GUUGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 184360 | 0.66 | 0.96407 |
Target: 5'- gGCGGGccGUGGcGCGGCgccuCUCGgACCUGGg- -3' miRNA: 3'- -CGCUC--UACU-CGCCG----GAGU-UGGACCac -5' |
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14269 | 3' | -56 | NC_003521.1 | + | 124923 | 0.66 | 0.96407 |
Target: 5'- cGCGAGcUGAcccaGGCCUUcccgGGCCUGGa- -3' miRNA: 3'- -CGCUCuACUcg--CCGGAG----UUGGACCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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