miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1427 3' -62.7 NC_001335.1 + 25028 0.66 0.319882
Target:  5'- gGGUAGaUgCGGCGCUCCGcGUGCCCg -3'
miRNA:   3'- gUCGUCgGgGUUGUGGGGC-CACGGGg -5'
1427 3' -62.7 NC_001335.1 + 26148 0.67 0.290836
Target:  5'- -cGCGGCCagaaCCcGCGCCUCGGgGCCUg -3'
miRNA:   3'- guCGUCGG----GGuUGUGGGGCCaCGGGg -5'
1427 3' -62.7 NC_001335.1 + 27180 0.66 0.35105
Target:  5'- --aCAcCCCCAGCGUCCCGGUGUUCa -3'
miRNA:   3'- gucGUcGGGGUUGUGGGGCCACGGGg -5'
1427 3' -62.7 NC_001335.1 + 28181 0.67 0.293645
Target:  5'- uCGGCGucuacaccgccgaacGCCCCGACAacguCCCCGaGgacUGCCCg -3'
miRNA:   3'- -GUCGU---------------CGGGGUUGU----GGGGC-C---ACGGGg -5'
1427 3' -62.7 NC_001335.1 + 29416 0.68 0.22733
Target:  5'- gCAGCGGUCCUcaGAguCCCUGGUGUCg- -3'
miRNA:   3'- -GUCGUCGGGG--UUguGGGGCCACGGgg -5'
1427 3' -62.7 NC_001335.1 + 31693 0.7 0.161422
Target:  5'- uCGGCAGCuccgacagaucgcaCCCAACACcuaccaggacauCCCGGaUGUCCCc -3'
miRNA:   3'- -GUCGUCG--------------GGGUUGUG------------GGGCC-ACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 32980 0.68 0.257486
Target:  5'- gAGCAccGCCCCugccCAgCCCGaGccgGCCCCg -3'
miRNA:   3'- gUCGU--CGGGGuu--GUgGGGC-Ca--CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 35700 0.66 0.34306
Target:  5'- gUAGCGGCUCCugauCGCCUCuGcauaGCCCCc -3'
miRNA:   3'- -GUCGUCGGGGuu--GUGGGGcCa---CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 38214 0.66 0.305094
Target:  5'- aGGCAGCCCCGguACAUCUCa-UGUCCa -3'
miRNA:   3'- gUCGUCGGGGU--UGUGGGGccACGGGg -5'
1427 3' -62.7 NC_001335.1 + 39202 0.67 0.297899
Target:  5'- aCGGUucuGCaCCCggUACCCCGGaGaCCUCu -3'
miRNA:   3'- -GUCGu--CG-GGGuuGUGGGGCCaC-GGGG- -5'
1427 3' -62.7 NC_001335.1 + 41889 0.66 0.35105
Target:  5'- aCGGCAGCUCg--UAUCCgGGUGCCgCu -3'
miRNA:   3'- -GUCGUCGGGguuGUGGGgCCACGGgG- -5'
1427 3' -62.7 NC_001335.1 + 51648 0.67 0.283905
Target:  5'- uGGCugucaAGCCCUAAuCGCaaaUUGGUGCCCUa -3'
miRNA:   3'- gUCG-----UCGGGGUU-GUGg--GGCCACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 51749 0.7 0.175965
Target:  5'- uGGaCAGUCCCGGCAgCCCG-UGCCgCg -3'
miRNA:   3'- gUC-GUCGGGGUUGUgGGGCcACGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.