miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1427 3' -62.7 NC_001335.1 + 51648 0.67 0.283905
Target:  5'- uGGCugucaAGCCCUAAuCGCaaaUUGGUGCCCUa -3'
miRNA:   3'- gUCG-----UCGGGGUU-GUGg--GGCCACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 1284 1.09 0.000166
Target:  5'- gCAGCAGCCCCAACACCCCGGUGCCCCc -3'
miRNA:   3'- -GUCGUCGGGGUUGUGGGGCCACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 13854 0.78 0.047616
Target:  5'- gUAGCGGCCCCGAUcCUCCGGUcagacCCCCg -3'
miRNA:   3'- -GUCGUCGGGGUUGuGGGGCCAc----GGGG- -5'
1427 3' -62.7 NC_001335.1 + 7505 0.74 0.095164
Target:  5'- aAGC-GCCggCCGACACCCCGGU-CUCCg -3'
miRNA:   3'- gUCGuCGG--GGUUGUGGGGCCAcGGGG- -5'
1427 3' -62.7 NC_001335.1 + 6618 0.73 0.115082
Target:  5'- gGGUgAGCCUCAACAaccaccaCCCGGagcuUGCCCCg -3'
miRNA:   3'- gUCG-UCGGGGUUGUg------GGGCC----ACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 17125 0.72 0.121452
Target:  5'- cCAGUcuGGCCCCGcACAUCCCGGcgcuggcgacgGCCCUc -3'
miRNA:   3'- -GUCG--UCGGGGU-UGUGGGGCCa----------CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 51749 0.7 0.175965
Target:  5'- uGGaCAGUCCCGGCAgCCCG-UGCCgCg -3'
miRNA:   3'- gUC-GUCGGGGUUGUgGGGCcACGGgG- -5'
1427 3' -62.7 NC_001335.1 + 16362 0.7 0.180597
Target:  5'- cCAGCAGggaCU--CACCCCGGUGUUCCa -3'
miRNA:   3'- -GUCGUCgg-GGuuGUGGGGCCACGGGG- -5'
1427 3' -62.7 NC_001335.1 + 29416 0.68 0.22733
Target:  5'- gCAGCGGUCCUcaGAguCCCUGGUGUCg- -3'
miRNA:   3'- -GUCGUCGGGG--UUguGGGGCCACGGgg -5'
1427 3' -62.7 NC_001335.1 + 35700 0.66 0.34306
Target:  5'- gUAGCGGCUCCugauCGCCUCuGcauaGCCCCc -3'
miRNA:   3'- -GUCGUCGGGGuu--GUGGGGcCa---CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 5948 0.66 0.319882
Target:  5'- uGGCAGCCCauCGGCAacuaCCCGGcagcgGCguuCCCg -3'
miRNA:   3'- gUCGUCGGG--GUUGUg---GGGCCa----CG---GGG- -5'
1427 3' -62.7 NC_001335.1 + 38214 0.66 0.305094
Target:  5'- aGGCAGCCCCGguACAUCUCa-UGUCCa -3'
miRNA:   3'- gUCGUCGGGGU--UGUGGGGccACGGGg -5'
1427 3' -62.7 NC_001335.1 + 99 0.67 0.290836
Target:  5'- gGGCGcGUgaacuCCC-ACACCCCGGUGUaguuacauCCCg -3'
miRNA:   3'- gUCGU-CG-----GGGuUGUGGGGCCACG--------GGG- -5'
1427 3' -62.7 NC_001335.1 + 25028 0.66 0.319882
Target:  5'- gGGUAGaUgCGGCGCUCCGcGUGCCCg -3'
miRNA:   3'- gUCGUCgGgGUUGUGGGGC-CACGGGg -5'
1427 3' -62.7 NC_001335.1 + 15822 0.67 0.290836
Target:  5'- aGGuCAGCCCgAACACCaaGGaGUUCCg -3'
miRNA:   3'- gUC-GUCGGGgUUGUGGggCCaCGGGG- -5'
1427 3' -62.7 NC_001335.1 + 13116 0.67 0.297899
Target:  5'- gAGCcuCCUCGACA--CCGGUGCCCg -3'
miRNA:   3'- gUCGucGGGGUUGUggGGCCACGGGg -5'
1427 3' -62.7 NC_001335.1 + 5485 0.66 0.327476
Target:  5'- uCGGCAccgccGCCCCGGCACUgCUGGgcaucGUCCUg -3'
miRNA:   3'- -GUCGU-----CGGGGUUGUGG-GGCCa----CGGGG- -5'
1427 3' -62.7 NC_001335.1 + 9776 0.66 0.35105
Target:  5'- -cGaCGGUCCCAgGCuCCCCGa-GCCCCa -3'
miRNA:   3'- guC-GUCGGGGU-UGuGGGGCcaCGGGG- -5'
1427 3' -62.7 NC_001335.1 + 26148 0.67 0.290836
Target:  5'- -cGCGGCCagaaCCcGCGCCUCGGgGCCUg -3'
miRNA:   3'- guCGUCGG----GGuUGUGGGGCCaCGGGg -5'
1427 3' -62.7 NC_001335.1 + 39202 0.67 0.297899
Target:  5'- aCGGUucuGCaCCCggUACCCCGGaGaCCUCu -3'
miRNA:   3'- -GUCGu--CG-GGGuuGUGGGGCCaC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.