miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 101195 0.67 0.674339
Target:  5'- cCCGGCG-GGCGGaUCUuGAC-CGAGAu -3'
miRNA:   3'- cGGCCGCgCCGCC-GGGuCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 102119 0.67 0.646244
Target:  5'- aGCCaGGCGCccguGCcGCCCAGGCUCa--- -3'
miRNA:   3'- -CGG-CCGCGc---CGcCGGGUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 102350 0.67 0.636851
Target:  5'- cGCCGGgGUGGCGGCa-GGcGCUCuuGAa -3'
miRNA:   3'- -CGGCCgCGCCGCCGggUC-UGAGcuCU- -5'
14272 3' -63.5 NC_003521.1 + 102940 0.71 0.398464
Target:  5'- gGCCgaGGCGUcGCGGUCCAGgcGCUCGGGc -3'
miRNA:   3'- -CGG--CCGCGcCGCCGGGUC--UGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 102979 0.74 0.268643
Target:  5'- uCUGGCGgGGCGGCCCAGcCgcggCGuGAg -3'
miRNA:   3'- cGGCCGCgCCGCCGGGUCuGa---GCuCU- -5'
14272 3' -63.5 NC_003521.1 + 103228 0.72 0.353417
Target:  5'- cGCCGGCcagGCGGCGGCCCAaGAauaaCGGu- -3'
miRNA:   3'- -CGGCCG---CGCCGCCGGGU-CUga--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 103497 0.67 0.671538
Target:  5'- cGCUGGCGaaagGGCGaGCCCAGcagcaggcgcgcgaACUCGcucauGGAg -3'
miRNA:   3'- -CGGCCGCg---CCGC-CGGGUC--------------UGAGC-----UCU- -5'
14272 3' -63.5 NC_003521.1 + 105599 0.66 0.702172
Target:  5'- cGCCGGCGCaGCcGCUCAGGCg----- -3'
miRNA:   3'- -CGGCCGCGcCGcCGGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 105634 0.69 0.543709
Target:  5'- uGCUcgGGCGUGuGCGugaaGCCCAG-CUCGGGGg -3'
miRNA:   3'- -CGG--CCGCGC-CGC----CGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 105943 0.69 0.50758
Target:  5'- gGCCGGCGCGGauGaugaCCGuGugUCGGGu -3'
miRNA:   3'- -CGGCCGCGCCgcCg---GGU-CugAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 108565 0.68 0.571347
Target:  5'- gGuuGGCGuuGCGGCCCAGgugguccaACUUGAc- -3'
miRNA:   3'- -CggCCGCgcCGCCGGGUC--------UGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 109350 0.71 0.406322
Target:  5'- aGCCGGCGCaGGaGGCCgacgAGGC-CGAGAg -3'
miRNA:   3'- -CGGCCGCG-CCgCCGGg---UCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 109424 0.67 0.646244
Target:  5'- -aCGGCGauGCGGUCCAGGCU-GAc- -3'
miRNA:   3'- cgGCCGCgcCGCCGGGUCUGAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 110068 0.68 0.562092
Target:  5'- cCCGGCGCGGCGcucgcGCCCGccgacacgucccGACUCa--- -3'
miRNA:   3'- cGGCCGCGCCGC-----CGGGU------------CUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 110677 0.68 0.589961
Target:  5'- gGCCaGCGCgucGGUGGCCUcGAgCUUGAGGu -3'
miRNA:   3'- -CGGcCGCG---CCGCCGGGuCU-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 110839 0.67 0.664994
Target:  5'- cGCCGGCGCaGCGGCagcgaCGGuGCaCGuAGAg -3'
miRNA:   3'- -CGGCCGCGcCGCCGg----GUC-UGaGC-UCU- -5'
14272 3' -63.5 NC_003521.1 + 111248 0.66 0.702172
Target:  5'- gGCgCGGCGCGGCGGagCAGcCaucgUCGGGc -3'
miRNA:   3'- -CG-GCCGCGCCGCCggGUCuG----AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 111591 0.66 0.71136
Target:  5'- uGCCGcGCGUGGCcagcGGCgCCGGACUg---- -3'
miRNA:   3'- -CGGC-CGCGCCG----CCG-GGUCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 111949 0.66 0.729558
Target:  5'- cCUGGCGCGGCGGCa-GGA--UGAGu -3'
miRNA:   3'- cGGCCGCGCCGCCGggUCUgaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 112435 0.66 0.729558
Target:  5'- cGCCcGCucaGGCGGCCCAGGCggcccuggUGGGc -3'
miRNA:   3'- -CGGcCGcg-CCGCCGGGUCUGa-------GCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.