miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 149729 0.66 0.716846
Target:  5'- aCCGGCGCaGGCgcagacgGGCCCcuguugcguuguccGGACaacCGAGAu -3'
miRNA:   3'- cGGCCGCG-CCG-------CCGGG--------------UCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 148631 0.66 0.692009
Target:  5'- gGCCGG-GCGGCgaaaaacGGCCCcGAgCUCGGcGGg -3'
miRNA:   3'- -CGGCCgCGCCG-------CCGGGuCU-GAGCU-CU- -5'
14272 3' -63.5 NC_003521.1 + 147841 0.67 0.664994
Target:  5'- uGCCGuGCaGcCGGgGGUgCAGGCgCGAGAa -3'
miRNA:   3'- -CGGC-CG-C-GCCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 147469 0.66 0.701251
Target:  5'- -aUGGCGCgacaggccgugaaGGUGGCCCAGA--UGAGGa -3'
miRNA:   3'- cgGCCGCG-------------CCGCCGGGUCUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 145897 0.69 0.534591
Target:  5'- cGCCGGCggcgggagcaGCGGCGGUUCGcaaacGGCcuUCGAGGa -3'
miRNA:   3'- -CGGCCG----------CGCCGCCGGGU-----CUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 145867 0.67 0.655627
Target:  5'- cCCGGCgGCgGGCGGCgCC-GACgaCGAGGc -3'
miRNA:   3'- cGGCCG-CG-CCGCCG-GGuCUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 145588 0.66 0.702172
Target:  5'- gGCaCGaCGCGGCGGCCguGGcCUCGc-- -3'
miRNA:   3'- -CG-GCcGCGCCGCCGGguCU-GAGCucu -5'
14272 3' -63.5 NC_003521.1 + 145384 0.7 0.463078
Target:  5'- aGCCGGUGCGcGaCGGCCUGGGCcugcucaUCGAc- -3'
miRNA:   3'- -CGGCCGCGC-C-GCCGGGUCUG-------AGCUcu -5'
14272 3' -63.5 NC_003521.1 + 144176 0.66 0.720491
Target:  5'- cGCCGGCGCcGCcuGCCgCGcGCUgGAGAa -3'
miRNA:   3'- -CGGCCGCGcCGc-CGG-GUcUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 140068 0.68 0.618063
Target:  5'- uGCaCGaGUGCGccaGGCCCAG-CUCGGGGu -3'
miRNA:   3'- -CG-GC-CGCGCcg-CCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 138795 0.67 0.664994
Target:  5'- uGCUGcGCGCcGUGGCCCAGguGCUCa--- -3'
miRNA:   3'- -CGGC-CGCGcCGCCGGGUC--UGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 137531 0.69 0.516523
Target:  5'- aCCGGCGCguGGUGGCCUAcGA--CGAGAc -3'
miRNA:   3'- cGGCCGCG--CCGCCGGGU-CUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 137248 0.68 0.589961
Target:  5'- gGCCGGgGCcgacGGCGGCagCGGGCagagCGGGGg -3'
miRNA:   3'- -CGGCCgCG----CCGCCGg-GUCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 135242 0.66 0.71502
Target:  5'- cGCCGGCggcggcgacgacacgGCGGCGGaCgCC-GACgaCGAGGa -3'
miRNA:   3'- -CGGCCG---------------CGCCGCC-G-GGuCUGa-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133748 0.69 0.543709
Target:  5'- uGCUGGC-CGGCaGGCCCGgcGAUUcCGGGGa -3'
miRNA:   3'- -CGGCCGcGCCG-CCGGGU--CUGA-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 133379 0.7 0.481165
Target:  5'- cGCCGGCacagcGCGGCGGUCCGcgcuuucgcgucGGCUCucaGGAa -3'
miRNA:   3'- -CGGCCG-----CGCCGCCGGGU------------CUGAGc--UCU- -5'
14272 3' -63.5 NC_003521.1 + 133169 0.7 0.463932
Target:  5'- aGCCGGgacaccagcaGUGGCGGCCUcGGCgaUCGGGAc -3'
miRNA:   3'- -CGGCCg---------CGCCGCCGGGuCUG--AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 132601 0.66 0.692935
Target:  5'- cGgCGGCGuCGGCguccgcaacGGCuuCCAGACUCGGc- -3'
miRNA:   3'- -CgGCCGC-GCCG---------CCG--GGUCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 131107 0.7 0.498704
Target:  5'- -aCGGCGgGGCGGCgCGGcuGC-CGGGAa -3'
miRNA:   3'- cgGCCGCgCCGCCGgGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 129718 0.68 0.618063
Target:  5'- uGCCGGC-C-GCGGCCCGucGACgCGAGc -3'
miRNA:   3'- -CGGCCGcGcCGCCGGGU--CUGaGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.