miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 164766 0.65 0.735863
Target:  5'- cGCCGGgcgaaccauagugaCGCGGCGGgCaCGGGuCgUCGGGGa -3'
miRNA:   3'- -CGGCC--------------GCGCCGCCgG-GUCU-G-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 145588 0.66 0.702172
Target:  5'- gGCaCGaCGCGGCGGCCguGGcCUCGc-- -3'
miRNA:   3'- -CG-GCcGCGCCGCCGGguCU-GAGCucu -5'
14272 3' -63.5 NC_003521.1 + 77721 0.66 0.683655
Target:  5'- uGuuGGCGaCGGCGGCCUcgguGGGCggCGucuGGu -3'
miRNA:   3'- -CggCCGC-GCCGCCGGG----UCUGa-GCu--CU- -5'
14272 3' -63.5 NC_003521.1 + 49580 0.66 0.71958
Target:  5'- cGUgGGcCGCGGCGccGCCUccucccaAGACUCGAu- -3'
miRNA:   3'- -CGgCC-GCGCCGC--CGGG-------UCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 74587 0.66 0.71136
Target:  5'- cGgCGGCGCGGCGuCCCGcGGC-CGGc- -3'
miRNA:   3'- -CgGCCGCGCCGCcGGGU-CUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 10497 0.66 0.692935
Target:  5'- cGCCGGCGgGGaUGGCguggccccCCAGGCggcgCGAc- -3'
miRNA:   3'- -CGGCCGCgCC-GCCG--------GGUCUGa---GCUcu -5'
14272 3' -63.5 NC_003521.1 + 224737 0.66 0.71136
Target:  5'- cGCCGaCGCaGGCGGCCagcGCgUCGGGGc -3'
miRNA:   3'- -CGGCcGCG-CCGCCGGgucUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 18703 0.66 0.702172
Target:  5'- gGCCGGCGCGaucCGGCUguGGCUg---- -3'
miRNA:   3'- -CGGCCGCGCc--GCCGGguCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 192040 0.66 0.692935
Target:  5'- cGCCGGCGUGcGCGGC--AGACgCGGc- -3'
miRNA:   3'- -CGGCCGCGC-CGCCGggUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 105599 0.66 0.702172
Target:  5'- cGCCGGCGCaGCcGCUCAGGCg----- -3'
miRNA:   3'- -CGGCCGCGcCGcCGGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 132601 0.66 0.692935
Target:  5'- cGgCGGCGuCGGCguccgcaacGGCuuCCAGACUCGGc- -3'
miRNA:   3'- -CgGCCGC-GCCG---------CCG--GGUCUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 64764 0.66 0.71136
Target:  5'- gGCCGGCGCGGCa--CCGGGCg----- -3'
miRNA:   3'- -CGGCCGCGCCGccgGGUCUGagcucu -5'
14272 3' -63.5 NC_003521.1 + 166281 0.66 0.683655
Target:  5'- cGCaCGGCGCGGCuGGUCCgcguGGcCUCGu-- -3'
miRNA:   3'- -CG-GCCGCGCCG-CCGGG----UCuGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 155613 0.66 0.729558
Target:  5'- uCCGGCGCGGCG-CCgggugacgCAGugUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCcGG--------GUCugAGCucu -5'
14272 3' -63.5 NC_003521.1 + 148631 0.66 0.692009
Target:  5'- gGCCGG-GCGGCgaaaaacGGCCCcGAgCUCGGcGGg -3'
miRNA:   3'- -CGGCCgCGCCG-------CCGGGuCU-GAGCU-CU- -5'
14272 3' -63.5 NC_003521.1 + 214823 0.66 0.710443
Target:  5'- gGCgCGGCGaCGGCGGuUCCAuGCUguuugcugcccggCGAGAg -3'
miRNA:   3'- -CG-GCCGC-GCCGCC-GGGUcUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 115393 0.66 0.692935
Target:  5'- uGCagGGCGCgGGCGGCcgccacggccuCCGGACUCa--- -3'
miRNA:   3'- -CGg-CCGCG-CCGCCG-----------GGUCUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 32637 0.66 0.692935
Target:  5'- uCCGucauCGCGGCGGCgCAGACgacggcggaaagUCGAGc -3'
miRNA:   3'- cGGCc---GCGCCGCCGgGUCUG------------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 164841 0.66 0.692009
Target:  5'- aCCGGCG-GcCGGCgCCAGACUucuuccuccucgaCGAGAa -3'
miRNA:   3'- cGGCCGCgCcGCCG-GGUCUGA-------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 69869 0.66 0.683655
Target:  5'- gGCCGccGCGCaGCGccacGCCCAGGCcauaGAGAa -3'
miRNA:   3'- -CGGC--CGCGcCGC----CGGGUCUGag--CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.