miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 17365 1.1 0.000999
Target:  5'- cGCCGGCGCGGCGGCCCAGACUCGAGAg -3'
miRNA:   3'- -CGGCCGCGCCGCCGGGUCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 53352 0.8 0.117277
Target:  5'- cGCCGGCGCGGCGGCggaggggccgaCAGAC-CGAGc -3'
miRNA:   3'- -CGGCCGCGCCGCCGg----------GUCUGaGCUCu -5'
14272 3' -63.5 NC_003521.1 + 88671 0.8 0.120121
Target:  5'- gGUCGGUGggcCGGCGGCCCGG-CUCGGGGa -3'
miRNA:   3'- -CGGCCGC---GCCGCCGGGUCuGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 236486 0.79 0.138573
Target:  5'- cGCCGGCgGCGGUGGCgCCAGGCauggacggUCGAGc -3'
miRNA:   3'- -CGGCCG-CGCCGCCG-GGUCUG--------AGCUCu -5'
14272 3' -63.5 NC_003521.1 + 152905 0.77 0.192073
Target:  5'- cCCGGCGCGGCGGCCagccaGGAgUCGu-- -3'
miRNA:   3'- cGGCCGCGCCGCCGGg----UCUgAGCucu -5'
14272 3' -63.5 NC_003521.1 + 210757 0.76 0.220113
Target:  5'- gGCCGGCGgGGaCGGCaCAGACU-GAGAc -3'
miRNA:   3'- -CGGCCGCgCC-GCCGgGUCUGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44909 0.75 0.235401
Target:  5'- -aCGGCGCGGCGGCgaGGACgaagaCGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCGggUCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218476 0.75 0.240691
Target:  5'- cGUgGGCGCaGUGGcCCCGGACgUCGGGAa -3'
miRNA:   3'- -CGgCCGCGcCGCC-GGGUCUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 207357 0.75 0.26285
Target:  5'- gGUCGGCGCGGcCGGCCgAcAC-CGAGAa -3'
miRNA:   3'- -CGGCCGCGCC-GCCGGgUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 102979 0.74 0.268643
Target:  5'- uCUGGCGgGGCGGCCCAGcCgcggCGuGAg -3'
miRNA:   3'- cGGCCGCgCCGCCGGGUCuGa---GCuCU- -5'
14272 3' -63.5 NC_003521.1 + 114428 0.74 0.292845
Target:  5'- gGCCGaGaccuGUGGCGGCaCCAGACccgCGAGAa -3'
miRNA:   3'- -CGGC-Cg---CGCCGCCG-GGUCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 92403 0.74 0.299156
Target:  5'- cGCCGGCGCGGCcGCCCGcaccauGGCUCc--- -3'
miRNA:   3'- -CGGCCGCGCCGcCGGGU------CUGAGcucu -5'
14272 3' -63.5 NC_003521.1 + 21931 0.74 0.305571
Target:  5'- cCUGGCG-GGCGGCCuCGGGCUgGAGc -3'
miRNA:   3'- cGGCCGCgCCGCCGG-GUCUGAgCUCu -5'
14272 3' -63.5 NC_003521.1 + 44363 0.73 0.339223
Target:  5'- cGCUGGgGCuGCGGCCCAcGCcCGAGGc -3'
miRNA:   3'- -CGGCCgCGcCGCCGGGUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 127226 0.73 0.344851
Target:  5'- cGCUGGCGCGGUGGUCCuccacgaagagcGGCUCGu-- -3'
miRNA:   3'- -CGGCCGCGCCGCCGGGu-----------CUGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 187489 0.73 0.346268
Target:  5'- cGCCGGCGUGGUGGUCaC-GACgauccgaCGAGAc -3'
miRNA:   3'- -CGGCCGCGCCGCCGG-GuCUGa------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 103228 0.72 0.353417
Target:  5'- cGCCGGCcagGCGGCGGCCCAaGAauaaCGGu- -3'
miRNA:   3'- -CGGCCG---CGCCGCCGGGU-CUga--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 80143 0.72 0.368026
Target:  5'- gGCCGGUGCuGCGcGUCCAGccGCUgGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 79040 0.72 0.370997
Target:  5'- gGCCGGCGUgacagacauggcguaGGgGGUCCGgGGCUCGGGc -3'
miRNA:   3'- -CGGCCGCG---------------CCgCCGGGU-CUGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 95546 0.72 0.374734
Target:  5'- cGCCGGCGCgcgagcuGGCcGCCgAGGC-CGAGGa -3'
miRNA:   3'- -CGGCCGCG-------CCGcCGGgUCUGaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.