miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 397 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 6085 0.69 0.50758
Target:  5'- gGCCGGUGCGGCGGCguuccgCCAcGGCUa---- -3'
miRNA:   3'- -CGGCCGCGCCGCCG------GGU-CUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 6169 0.66 0.729558
Target:  5'- cCUGGCGgGGCcaGGCgCAGAa-CGAGAc -3'
miRNA:   3'- cGGCCGCgCCG--CCGgGUCUgaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 6394 0.66 0.720491
Target:  5'- cGCCGcagcuacCGCGGCGGCgaCGGGucuugccgcCUCGGGAc -3'
miRNA:   3'- -CGGCc------GCGCCGCCGg-GUCU---------GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 10497 0.66 0.692935
Target:  5'- cGCCGGCGgGGaUGGCguggccccCCAGGCggcgCGAc- -3'
miRNA:   3'- -CGGCCGCgCC-GCCG--------GGUCUGa---GCUcu -5'
14272 3' -63.5 NC_003521.1 + 12137 0.66 0.720491
Target:  5'- uCgGGUGCGGCGGCCUuaauaaAGugUgGAu- -3'
miRNA:   3'- cGgCCGCGCCGCCGGG------UCugAgCUcu -5'
14272 3' -63.5 NC_003521.1 + 12915 0.68 0.608679
Target:  5'- aGCCuGGCGCuGGUGGCgggaCCAgGGC-CGGGAg -3'
miRNA:   3'- -CGG-CCGCG-CCGCCG----GGU-CUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 13988 0.69 0.50758
Target:  5'- cCCGGCGCGGCGGC--GGg--CGAGGa -3'
miRNA:   3'- cGGCCGCGCCGCCGggUCugaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 16743 0.69 0.552878
Target:  5'- cGCCGGCGC-GCGcGCCCgccggaGGACgagGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGG------UCUGag-CUCU- -5'
14272 3' -63.5 NC_003521.1 + 16797 0.7 0.480296
Target:  5'- uGCCGGCGCccauuauGG-GGCgCAGAUcCGAGAu -3'
miRNA:   3'- -CGGCCGCG-------CCgCCGgGUCUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17019 0.66 0.710443
Target:  5'- cGgCGGCGCaggcccgucgucuGGCGGCCCAcggcgguaacGGCgccgacagCGAGGa -3'
miRNA:   3'- -CgGCCGCG-------------CCGCCGGGU----------CUGa-------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17365 1.1 0.000999
Target:  5'- cGCCGGCGCGGCGGCCCAGACUCGAGAg -3'
miRNA:   3'- -CGGCCGCGCCGCCGGGUCUGAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 17502 0.7 0.481165
Target:  5'- cGCCGGUcacgGCGGUucccGGCCCGGcgGCgCGGGAu -3'
miRNA:   3'- -CGGCCG----CGCCG----CCGGGUC--UGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 18703 0.66 0.702172
Target:  5'- gGCCGGCGCGaucCGGCUguGGCUg---- -3'
miRNA:   3'- -CGGCCGCGCc--GCCGGguCUGAgcucu -5'
14272 3' -63.5 NC_003521.1 + 18736 0.67 0.664994
Target:  5'- uGCCGGCGCugcagGGCGGgCUgugggaGGACaacgaCGAGAc -3'
miRNA:   3'- -CGGCCGCG-----CCGCCgGG------UCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 19483 0.68 0.562092
Target:  5'- gGCCaGGUGCaGGUGGCCC--GCUCGGu- -3'
miRNA:   3'- -CGG-CCGCG-CCGCCGGGucUGAGCUcu -5'
14272 3' -63.5 NC_003521.1 + 21931 0.74 0.305571
Target:  5'- cCUGGCG-GGCGGCCuCGGGCUgGAGc -3'
miRNA:   3'- cGGCCGCgCCGCCGG-GUCUGAgCUCu -5'
14272 3' -63.5 NC_003521.1 + 24431 0.68 0.589961
Target:  5'- -aCGGCGCaGgGGCCggCGGGCUCG-GAa -3'
miRNA:   3'- cgGCCGCGcCgCCGG--GUCUGAGCuCU- -5'
14272 3' -63.5 NC_003521.1 + 25692 0.66 0.702172
Target:  5'- cGCUGGCcuucGUGGCGGCCCuGAUcgUCa--- -3'
miRNA:   3'- -CGGCCG----CGCCGCCGGGuCUG--AGcucu -5'
14272 3' -63.5 NC_003521.1 + 32637 0.66 0.692935
Target:  5'- uCCGucauCGCGGCGGCgCAGACgacggcggaaagUCGAGc -3'
miRNA:   3'- cGGCc---GCGCCGCCGgGUCUG------------AGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.