Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 3' | -63.5 | NC_003521.1 | + | 96785 | 0.7 | 0.455436 |
Target: 5'- cGCCGGCagcaGCGGCGGCgCuCGGGCaCGAu- -3' miRNA: 3'- -CGGCCG----CGCCGCCG-G-GUCUGaGCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 52192 | 0.72 | 0.383044 |
Target: 5'- cGCCGGgGCGGCGaGCUcauCAGACaguaCGGGGg -3' miRNA: 3'- -CGGCCgCGCCGC-CGG---GUCUGa---GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 52316 | 0.71 | 0.403954 |
Target: 5'- cGCCGGCcuccucguaucucgGCGGCGGaCCCAGGCccaCGGc- -3' miRNA: 3'- -CGGCCG--------------CGCCGCC-GGGUCUGa--GCUcu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 224012 | 0.71 | 0.406322 |
Target: 5'- -gCGGCaGCGGCgGGCCCGGcGgUCGGGGc -3' miRNA: 3'- cgGCCG-CGCCG-CCGGGUC-UgAGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 223476 | 0.71 | 0.414276 |
Target: 5'- cGCCGGCGUcaCGGCCCGGGaggUGGGGc -3' miRNA: 3'- -CGGCCGCGccGCCGGGUCUga-GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 152371 | 0.71 | 0.438703 |
Target: 5'- gGCCGGgGCGGCGcGCCCucuACUCuAGu -3' miRNA: 3'- -CGGCCgCGCCGC-CGGGuc-UGAGcUCu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 56422 | 0.71 | 0.442021 |
Target: 5'- cGCCGGUacucGCGGUcgaaggccgccucguGGCCCAGGuC-CGAGAg -3' miRNA: 3'- -CGGCCG----CGCCG---------------CCGGGUCU-GaGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 221906 | 0.71 | 0.447026 |
Target: 5'- uGCCGGCGC-GCGGCgCCAcccUUCGGGGc -3' miRNA: 3'- -CGGCCGCGcCGCCG-GGUcu-GAGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 397 | 0.71 | 0.45038 |
Target: 5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3' miRNA: 3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 178386 | 0.72 | 0.383044 |
Target: 5'- -gCGcGCGCGGCgGGCUCAGACgagGAGAu -3' miRNA: 3'- cgGC-CGCGCCG-CCGGGUCUGag-CUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 79040 | 0.72 | 0.370997 |
Target: 5'- gGCCGGCGUgacagacauggcguaGGgGGUCCGgGGCUCGGGc -3' miRNA: 3'- -CGGCCGCG---------------CCgCCGGGU-CUGAGCUCu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 80143 | 0.72 | 0.368026 |
Target: 5'- gGCCGGUGCuGCGcGUCCAGccGCUgGAGGg -3' miRNA: 3'- -CGGCCGCGcCGC-CGGGUC--UGAgCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 44909 | 0.75 | 0.235401 |
Target: 5'- -aCGGCGCGGCGGCgaGGACgaagaCGAGGa -3' miRNA: 3'- cgGCCGCGCCGCCGggUCUGa----GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 218476 | 0.75 | 0.240691 |
Target: 5'- cGUgGGCGCaGUGGcCCCGGACgUCGGGAa -3' miRNA: 3'- -CGgCCGCGcCGCC-GGGUCUG-AGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 207357 | 0.75 | 0.26285 |
Target: 5'- gGUCGGCGCGGcCGGCCgAcAC-CGAGAa -3' miRNA: 3'- -CGGCCGCGCC-GCCGGgUcUGaGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 114428 | 0.74 | 0.292845 |
Target: 5'- gGCCGaGaccuGUGGCGGCaCCAGACccgCGAGAa -3' miRNA: 3'- -CGGC-Cg---CGCCGCCG-GGUCUGa--GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 44363 | 0.73 | 0.339223 |
Target: 5'- cGCUGGgGCuGCGGCCCAcGCcCGAGGc -3' miRNA: 3'- -CGGCCgCGcCGCCGGGUcUGaGCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 127226 | 0.73 | 0.344851 |
Target: 5'- cGCUGGCGCGGUGGUCCuccacgaagagcGGCUCGu-- -3' miRNA: 3'- -CGGCCGCGCCGCCGGGu-----------CUGAGCucu -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 187489 | 0.73 | 0.346268 |
Target: 5'- cGCCGGCGUGGUGGUCaC-GACgauccgaCGAGAc -3' miRNA: 3'- -CGGCCGCGCCGCCGG-GuCUGa------GCUCU- -5' |
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14272 | 3' | -63.5 | NC_003521.1 | + | 103228 | 0.72 | 0.353417 |
Target: 5'- cGCCGGCcagGCGGCGGCCCAaGAauaaCGGu- -3' miRNA: 3'- -CGGCCG---CGCCGCCGGGU-CUga--GCUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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