miRNA display CGI


Results 1 - 20 of 193 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 3' -63.5 NC_003521.1 + 96785 0.7 0.455436
Target:  5'- cGCCGGCagcaGCGGCGGCgCuCGGGCaCGAu- -3'
miRNA:   3'- -CGGCCG----CGCCGCCG-G-GUCUGaGCUcu -5'
14272 3' -63.5 NC_003521.1 + 52192 0.72 0.383044
Target:  5'- cGCCGGgGCGGCGaGCUcauCAGACaguaCGGGGg -3'
miRNA:   3'- -CGGCCgCGCCGC-CGG---GUCUGa---GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 52316 0.71 0.403954
Target:  5'- cGCCGGCcuccucguaucucgGCGGCGGaCCCAGGCccaCGGc- -3'
miRNA:   3'- -CGGCCG--------------CGCCGCC-GGGUCUGa--GCUcu -5'
14272 3' -63.5 NC_003521.1 + 224012 0.71 0.406322
Target:  5'- -gCGGCaGCGGCgGGCCCGGcGgUCGGGGc -3'
miRNA:   3'- cgGCCG-CGCCG-CCGGGUC-UgAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 223476 0.71 0.414276
Target:  5'- cGCCGGCGUcaCGGCCCGGGaggUGGGGc -3'
miRNA:   3'- -CGGCCGCGccGCCGGGUCUga-GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 152371 0.71 0.438703
Target:  5'- gGCCGGgGCGGCGcGCCCucuACUCuAGu -3'
miRNA:   3'- -CGGCCgCGCCGC-CGGGuc-UGAGcUCu -5'
14272 3' -63.5 NC_003521.1 + 56422 0.71 0.442021
Target:  5'- cGCCGGUacucGCGGUcgaaggccgccucguGGCCCAGGuC-CGAGAg -3'
miRNA:   3'- -CGGCCG----CGCCG---------------CCGGGUCU-GaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 221906 0.71 0.447026
Target:  5'- uGCCGGCGC-GCGGCgCCAcccUUCGGGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCG-GGUcu-GAGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 397 0.71 0.45038
Target:  5'- uGCUGGCGC-GCGGCUguGACUgcagcugugugcuggCGAGGc -3'
miRNA:   3'- -CGGCCGCGcCGCCGGguCUGA---------------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 178386 0.72 0.383044
Target:  5'- -gCGcGCGCGGCgGGCUCAGACgagGAGAu -3'
miRNA:   3'- cgGC-CGCGCCG-CCGGGUCUGag-CUCU- -5'
14272 3' -63.5 NC_003521.1 + 79040 0.72 0.370997
Target:  5'- gGCCGGCGUgacagacauggcguaGGgGGUCCGgGGCUCGGGc -3'
miRNA:   3'- -CGGCCGCG---------------CCgCCGGGU-CUGAGCUCu -5'
14272 3' -63.5 NC_003521.1 + 80143 0.72 0.368026
Target:  5'- gGCCGGUGCuGCGcGUCCAGccGCUgGAGGg -3'
miRNA:   3'- -CGGCCGCGcCGC-CGGGUC--UGAgCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44909 0.75 0.235401
Target:  5'- -aCGGCGCGGCGGCgaGGACgaagaCGAGGa -3'
miRNA:   3'- cgGCCGCGCCGCCGggUCUGa----GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 218476 0.75 0.240691
Target:  5'- cGUgGGCGCaGUGGcCCCGGACgUCGGGAa -3'
miRNA:   3'- -CGgCCGCGcCGCC-GGGUCUG-AGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 207357 0.75 0.26285
Target:  5'- gGUCGGCGCGGcCGGCCgAcAC-CGAGAa -3'
miRNA:   3'- -CGGCCGCGCC-GCCGGgUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 114428 0.74 0.292845
Target:  5'- gGCCGaGaccuGUGGCGGCaCCAGACccgCGAGAa -3'
miRNA:   3'- -CGGC-Cg---CGCCGCCG-GGUCUGa--GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 44363 0.73 0.339223
Target:  5'- cGCUGGgGCuGCGGCCCAcGCcCGAGGc -3'
miRNA:   3'- -CGGCCgCGcCGCCGGGUcUGaGCUCU- -5'
14272 3' -63.5 NC_003521.1 + 127226 0.73 0.344851
Target:  5'- cGCUGGCGCGGUGGUCCuccacgaagagcGGCUCGu-- -3'
miRNA:   3'- -CGGCCGCGCCGCCGGGu-----------CUGAGCucu -5'
14272 3' -63.5 NC_003521.1 + 187489 0.73 0.346268
Target:  5'- cGCCGGCGUGGUGGUCaC-GACgauccgaCGAGAc -3'
miRNA:   3'- -CGGCCGCGCCGCCGG-GuCUGa------GCUCU- -5'
14272 3' -63.5 NC_003521.1 + 103228 0.72 0.353417
Target:  5'- cGCCGGCcagGCGGCGGCCCAaGAauaaCGGu- -3'
miRNA:   3'- -CGGCCG---CGCCGCCGGGU-CUga--GCUcu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.