miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 190346 0.68 0.99731
Target:  5'- -------cGC--UGugGCaCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaACugCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 32866 0.68 0.997692
Target:  5'- -----gAGGCcgaucggUUUGGCGcCCGCGCCGc -3'
miRNA:   3'- auauaaUUCG-------AAACUGC-GGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 226841 0.68 0.997731
Target:  5'- -------cGCcc-GcCGCCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 86580 0.69 0.994924
Target:  5'- -----gAGGCaggGcACGCCGCaGCCGGg -3'
miRNA:   3'- auauaaUUCGaaaC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 91584 0.69 0.993206
Target:  5'- cGUcgUAGGCguaguaGCCGCGCCGc -3'
miRNA:   3'- aUAuaAUUCGaaacugCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 114855 0.69 0.992188
Target:  5'- gGUGUgcgaacuGGUgcUGACGcCCGCGUCGGc -3'
miRNA:   3'- aUAUAau-----UCGaaACUGC-GGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166231 0.69 0.994115
Target:  5'- gGUAgaaGAGCg-UGAUGCCGC-CCGGc -3'
miRNA:   3'- aUAUaa-UUCGaaACUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 112063 0.69 0.993206
Target:  5'- -------uGCUggagGACGCCGCGgUGGg -3'
miRNA:   3'- auauaauuCGAaa--CUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 62214 0.69 0.993206
Target:  5'- -----gAGGCguugGACGCCGUGCUGc -3'
miRNA:   3'- auauaaUUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 128961 0.69 0.993206
Target:  5'- -----gGGGCUggcGGCGUgGCGCUGGa -3'
miRNA:   3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 2604 0.69 0.994115
Target:  5'- -------cGCUc-GACGCCGUGCCGa -3'
miRNA:   3'- auauaauuCGAaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 167060 0.69 0.994115
Target:  5'- -------cGCUcaUGACGCCGgUGCCGGc -3'
miRNA:   3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 211954 0.69 0.994115
Target:  5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3'
miRNA:   3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 169297 0.69 0.994924
Target:  5'- -----cGGGCUcggUGACGUCG-GCCGGc -3'
miRNA:   3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 13917 0.69 0.992188
Target:  5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3'
miRNA:   3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 98166 0.69 0.992188
Target:  5'- -------uGCUgacGGCGCUGCGCCGa -3'
miRNA:   3'- auauaauuCGAaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 211163 0.69 0.991052
Target:  5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3'
miRNA:   3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 46807 0.69 0.991052
Target:  5'- ------uGGuCUggaUGACGCCGCcGCCGGu -3'
miRNA:   3'- auauaauUC-GAa--ACUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 209366 0.69 0.993206
Target:  5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3'
miRNA:   3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.