Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 63960 | 0.7 | 0.986851 |
Target: 5'- -----gGAGCUgcUGGCGCgGCGCCa- -3' miRNA: 3'- auauaaUUCGAa-ACUGCGgCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 109502 | 0.7 | 0.98979 |
Target: 5'- ------cAGCga-GugGUCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCugCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 227600 | 0.7 | 0.98979 |
Target: 5'- cAUGgcAGGCUUgGGCGCCG-GUCGGc -3' miRNA: 3'- aUAUaaUUCGAAaCUGCGGCgCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 31716 | 0.7 | 0.988392 |
Target: 5'- cAUGUgcgcguGCUggGACGCCGCgGCCa- -3' miRNA: 3'- aUAUAauu---CGAaaCUGCGGCG-CGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 165644 | 0.7 | 0.985157 |
Target: 5'- gGUGUUGAGCagcagcACGCCGCGCgGc -3' miRNA: 3'- aUAUAAUUCGaaac--UGCGGCGCGgCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 148421 | 0.7 | 0.983302 |
Target: 5'- cAUGgu--GCg--GGCgGCCGCGCCGGc -3' miRNA: 3'- aUAUaauuCGaaaCUG-CGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 90155 | 0.7 | 0.988392 |
Target: 5'- ------cAGCagcGGCGCCGCcGCCGGa -3' miRNA: 3'- auauaauUCGaaaCUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 44235 | 0.7 | 0.983302 |
Target: 5'- -----cAAGCUcUGcCGCCGUGCgCGGg -3' miRNA: 3'- auauaaUUCGAaACuGCGGCGCG-GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 165217 | 0.71 | 0.979072 |
Target: 5'- ----cUGAGCcgUGGCGCCGC-CCGa -3' miRNA: 3'- auauaAUUCGaaACUGCGGCGcGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 126067 | 0.72 | 0.96831 |
Target: 5'- cGUGUccAGCagcUGugGCCGCGCCa- -3' miRNA: 3'- aUAUAauUCGaa-ACugCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 224085 | 0.72 | 0.957999 |
Target: 5'- ------cGGCg--GGCGCgCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUGCG-GCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 129578 | 0.72 | 0.957999 |
Target: 5'- ------uGGCUgcuccgccGCGCCGCGCCGGc -3' miRNA: 3'- auauaauUCGAaac-----UGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 216630 | 0.72 | 0.954104 |
Target: 5'- ----gUAGGCgggcGCGCCGaCGCCGGg -3' miRNA: 3'- auauaAUUCGaaacUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 176861 | 0.72 | 0.965097 |
Target: 5'- ------uGGUUaUGGCGCCGCGCCa- -3' miRNA: 3'- auauaauUCGAaACUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 203402 | 0.72 | 0.954104 |
Target: 5'- -----gAGGCUc-GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCGAaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 14738 | 0.72 | 0.965097 |
Target: 5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3' miRNA: 3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 141201 | 0.72 | 0.965097 |
Target: 5'- ------uGGCcgUGGCGCUGCGCCGc -3' miRNA: 3'- auauaauUCGaaACUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 222111 | 0.72 | 0.957999 |
Target: 5'- ------cAGCgucucgaGGCGCUGCGCCGGg -3' miRNA: 3'- auauaauUCGaaa----CUGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 166242 | 0.73 | 0.931009 |
Target: 5'- -------cGCgg-GACGCCGCGCCGc -3' miRNA: 3'- auauaauuCGaaaCUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 223460 | 0.73 | 0.940982 |
Target: 5'- -----cGAGuCUggGcCGCCGCGCCGGc -3' miRNA: 3'- auauaaUUC-GAaaCuGCGGCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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