Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 223460 | 0.73 | 0.940982 |
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Target: 5'- -----cGAGuCUggGcCGCCGCGCCGGc -3' miRNA: 3'- auauaaUUC-GAaaCuGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 11922 | 0.74 | 0.914187 |
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Target: 5'- uUGUGUUAGcgccGCUUUGACGCCGUGUUu- -3' miRNA: 3'- -AUAUAAUU----CGAAACUGCGGCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 87923 | 0.74 | 0.92565 |
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Target: 5'- ------uGGCUggc-CGCCGCGCCGGg -3' miRNA: 3'- auauaauUCGAaacuGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 85212 | 0.74 | 0.92565 |
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Target: 5'- -------uGCgucacccGGCGCCGCGCCGGa -3' miRNA: 3'- auauaauuCGaaa----CUGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 102329 | 0.75 | 0.873959 |
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Target: 5'- cGUcgUGcGCgugGGCGCCGaCGCCGGg -3' miRNA: 3'- aUAuaAUuCGaaaCUGCGGC-GCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 70706 | 0.76 | 0.858701 |
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Target: 5'- -----cAAGCUgcgucGGCGCCuGCGCCGGa -3' miRNA: 3'- auauaaUUCGAaa---CUGCGG-CGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 130758 | 0.77 | 0.789749 |
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Target: 5'- -----cGGGCgcgaGCGCCGCGCCGGg -3' miRNA: 3'- auauaaUUCGaaacUGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 197257 | 0.78 | 0.770858 |
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Target: 5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3' miRNA: 3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 17403 | 1.11 | 0.014335 |
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Target: 5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3' miRNA: 3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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