miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 211168 0.67 0.998821
Target:  5'- gGUGUUuuucggaGGCGCCGCGCuCGGu -3'
miRNA:   3'- aUAUAAuucgaaaCUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 64527 0.67 0.998096
Target:  5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3'
miRNA:   3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5'
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 170947 0.67 0.999103
Target:  5'- cUAUGgccUGGGCg-UGGCGCUGCGCggCGGc -3'
miRNA:   3'- -AUAUa--AUUCGaaACUGCGGCGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 129336 0.67 0.999103
Target:  5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3'
miRNA:   3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5'
14272 5' -49.6 NC_003521.1 + 171643 0.67 0.998909
Target:  5'- gUAUGUcuAGC----GCGCCGCGgCGGg -3'
miRNA:   3'- -AUAUAauUCGaaacUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 105397 0.67 0.998909
Target:  5'- -------cGCg--GGCGCCaaaucGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 18919 0.67 0.998909
Target:  5'- -----gAAGgg-UGGCGCCGCgcGCCGGc -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCG--CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 39018 0.67 0.998909
Target:  5'- -----gGAGCg--GGCGCCGCcgaaggauuGCUGGg -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCG---------CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 49466 0.67 0.998909
Target:  5'- -----aAAGaCgaUGACGCCGUGCCa- -3'
miRNA:   3'- auauaaUUC-GaaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 126780 0.67 0.998909
Target:  5'- -----cAGGCccUGGCGCUGCGCgUGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 85760 0.67 0.999103
Target:  5'- ----aUGAGCgagGugGCCaGCGCCu- -3'
miRNA:   3'- auauaAUUCGaaaCugCGG-CGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 108194 0.67 0.999103
Target:  5'- -------cGCcggUGGCGCCGCcGCCGa -3'
miRNA:   3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 56463 0.66 0.999692
Target:  5'- -----cGAGa---GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCgaaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 108220 0.66 0.999692
Target:  5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3'
miRNA:   3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.