Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 123576 | 0.66 | 0.999614 |
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Target: 5'- ------uGGCgggaUGGCgGCgGCGCCGGg -3' miRNA: 3'- auauaauUCGaa--ACUG-CGgCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 89823 | 0.66 | 0.999614 |
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Target: 5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3' miRNA: 3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 62632 | 0.66 | 0.999614 |
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Target: 5'- -----cGAGCUUcGGCGCCGC-CCu- -3' miRNA: 3'- auauaaUUCGAAaCUGCGGCGcGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 130302 | 0.66 | 0.999692 |
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Target: 5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3' miRNA: 3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 103325 | 0.66 | 0.999692 |
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Target: 5'- -----cAGGCgcUGACGCgccaGCGCCGu -3' miRNA: 3'- auauaaUUCGaaACUGCGg---CGCGGCc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 56463 | 0.66 | 0.999692 |
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Target: 5'- -----cGAGa---GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCgaaaCUGCGGCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 165269 | 0.66 | 0.999692 |
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Target: 5'- -----aGGGCgcUGGCguaGCCGCcGCCGGc -3' miRNA: 3'- auauaaUUCGaaACUG---CGGCG-CGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 27247 | 0.66 | 0.999692 |
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Target: 5'- ------cGGCUgcuacgUGGCGCUGCuGUCGGu -3' miRNA: 3'- auauaauUCGAa-----ACUGCGGCG-CGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 108220 | 0.66 | 0.999692 |
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Target: 5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3' miRNA: 3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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