miRNA display CGI


Results 61 - 80 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 112063 0.69 0.993206
Target:  5'- -------uGCUggagGACGCCGCGgUGGg -3'
miRNA:   3'- auauaauuCGAaa--CUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 113384 0.67 0.998096
Target:  5'- --gGUUAcGGCg--GACGCCGCgGgCGGg -3'
miRNA:   3'- auaUAAU-UCGaaaCUGCGGCG-CgGCC- -5'
14272 5' -49.6 NC_003521.1 + 114855 0.69 0.992188
Target:  5'- gGUGUgcgaacuGGUgcUGACGcCCGCGUCGGc -3'
miRNA:   3'- aUAUAau-----UCGaaACUGC-GGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 116881 0.73 0.940982
Target:  5'- aGUGgcgcGGCUgcGGCGgCGCGCCGGc -3'
miRNA:   3'- aUAUaau-UCGAaaCUGCgGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119199 0.67 0.99841
Target:  5'- -----aAGGacgUGGCGCUGCGCCaGGu -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 120241 0.66 0.999405
Target:  5'- -----gGAGCc--GGCgGCCGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaaCUG-CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 123576 0.66 0.999614
Target:  5'- ------uGGCgggaUGGCgGCgGCGCCGGg -3'
miRNA:   3'- auauaauUCGaa--ACUG-CGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 125860 0.66 0.999267
Target:  5'- -----cAGGCgacUGACGCCGCagcaGCCGc -3'
miRNA:   3'- auauaaUUCGaa-ACUGCGGCG----CGGCc -5'
14272 5' -49.6 NC_003521.1 + 126067 0.72 0.96831
Target:  5'- cGUGUccAGCagcUGugGCCGCGCCa- -3'
miRNA:   3'- aUAUAauUCGaa-ACugCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 126780 0.67 0.998909
Target:  5'- -----cAGGCccUGGCGCUGCGCgUGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 128961 0.69 0.993206
Target:  5'- -----gGGGCUggcGGCGUgGCGCUGGa -3'
miRNA:   3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129336 0.67 0.999103
Target:  5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3'
miRNA:   3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5'
14272 5' -49.6 NC_003521.1 + 129578 0.72 0.957999
Target:  5'- ------uGGCUgcuccgccGCGCCGCGCCGGc -3'
miRNA:   3'- auauaauUCGAaac-----UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129651 0.66 0.999267
Target:  5'- ------------cGGCGCCGuCGCCGGg -3'
miRNA:   3'- auauaauucgaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5'
14272 5' -49.6 NC_003521.1 + 130758 0.77 0.789749
Target:  5'- -----cGGGCgcgaGCGCCGCGCCGGg -3'
miRNA:   3'- auauaaUUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 135604 0.68 0.99731
Target:  5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3'
miRNA:   3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 139188 0.67 0.99841
Target:  5'- -------cGCUgaacgUGACGCgcuaccaGCGCCGGg -3'
miRNA:   3'- auauaauuCGAa----ACUGCGg------CGCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.