miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 175721 0.66 0.999509
Target:  5'- ------cAGCUgucGGCGCCgcucuuccuccugGCGCCGGu -3'
miRNA:   3'- auauaauUCGAaa-CUGCGG-------------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 176055 0.67 0.998679
Target:  5'- -------cGCUUggGAucgcccggUGCCGCGCCGGc -3'
miRNA:   3'- auauaauuCGAAa-CU--------GCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 181938 0.68 0.99731
Target:  5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 187449 0.67 0.998909
Target:  5'- -----gAAGCUgguGCGCCGCGUcagCGGg -3'
miRNA:   3'- auauaaUUCGAaacUGCGGCGCG---GCC- -5'
14272 5' -49.6 NC_003521.1 + 190346 0.68 0.99731
Target:  5'- -------cGC--UGugGCaCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaACugCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197257 0.78 0.770858
Target:  5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3'
miRNA:   3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197335 0.68 0.99731
Target:  5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3'
miRNA:   3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197384 0.66 0.999267
Target:  5'- -----gAGGCUcUGGCucGCCGC-CCGGg -3'
miRNA:   3'- auauaaUUCGAaACUG--CGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 201239 0.66 0.999405
Target:  5'- -----aGGGCag-GAcCGCCGaCGCCGGc -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 203402 0.72 0.954104
Target:  5'- -----gAGGCUc-GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 209366 0.69 0.993206
Target:  5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3'
miRNA:   3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 210121 0.66 0.999405
Target:  5'- ----aUGAGCccgcGGCGCCGCGuuGu -3'
miRNA:   3'- auauaAUUCGaaa-CUGCGGCGCggCc -5'
14272 5' -49.6 NC_003521.1 + 211163 0.69 0.991052
Target:  5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3'
miRNA:   3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 211168 0.67 0.998821
Target:  5'- gGUGUUuuucggaGGCGCCGCGCuCGGu -3'
miRNA:   3'- aUAUAAuucgaaaCUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 211954 0.69 0.994115
Target:  5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3'
miRNA:   3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 214269 0.68 0.997731
Target:  5'- -------cGCccUGACGCCGuCGCUGGc -3'
miRNA:   3'- auauaauuCGaaACUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 216630 0.72 0.954104
Target:  5'- ----gUAGGCgggcGCGCCGaCGCCGGg -3'
miRNA:   3'- auauaAUUCGaaacUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 221764 0.67 0.99841
Target:  5'- ------cAGCgucuGCGCCGCGCCGc -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.