Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 222111 | 0.72 | 0.957999 |
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Target: 5'- ------cAGCgucucgaGGCGCUGCGCCGGg -3' miRNA: 3'- auauaauUCGaaa----CUGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 223460 | 0.73 | 0.940982 |
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Target: 5'- -----cGAGuCUggGcCGCCGCGCCGGc -3' miRNA: 3'- auauaaUUC-GAaaCuGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 224085 | 0.72 | 0.957999 |
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Target: 5'- ------cGGCg--GGCGCgCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUGCG-GCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 225736 | 0.68 | 0.99564 |
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Target: 5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3' miRNA: 3'- auauaAUUCGA--AACUGCgGCGCGGCc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 226841 | 0.68 | 0.997731 |
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Target: 5'- -------cGCcc-GcCGCCGCGCCGGg -3' miRNA: 3'- auauaauuCGaaaCuGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 227600 | 0.7 | 0.98979 |
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Target: 5'- cAUGgcAGGCUUgGGCGCCG-GUCGGc -3' miRNA: 3'- aUAUaaUUCGAAaCUGCGGCgCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 232820 | 0.68 | 0.996271 |
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Target: 5'- -----gGAGCUacGGCGCUGCcCCGGu -3' miRNA: 3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 235164 | 0.66 | 0.999405 |
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Target: 5'- -----cGAGCgcgaUUGGCGUCGCGUCa- -3' miRNA: 3'- auauaaUUCGa---AACUGCGGCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 235285 | 0.66 | 0.999614 |
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Target: 5'- ------uGGC---GGCgGCCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUG-CGGCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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