Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 125860 | 0.66 | 0.999267 |
Target: 5'- -----cAGGCgacUGACGCCGCagcaGCCGc -3' miRNA: 3'- auauaaUUCGaa-ACUGCGGCG----CGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 123576 | 0.66 | 0.999614 |
Target: 5'- ------uGGCgggaUGGCgGCgGCGCCGGg -3' miRNA: 3'- auauaauUCGaa--ACUG-CGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 120241 | 0.66 | 0.999405 |
Target: 5'- -----gGAGCc--GGCgGCCGCGCCGu -3' miRNA: 3'- auauaaUUCGaaaCUG-CGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 119233 | 0.66 | 0.999519 |
Target: 5'- --gGUUGAGC----ACGCCGCGCUu- -3' miRNA: 3'- auaUAAUUCGaaacUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 119199 | 0.67 | 0.99841 |
Target: 5'- -----aAGGacgUGGCGCUGCGCCaGGu -3' miRNA: 3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 116881 | 0.73 | 0.940982 |
Target: 5'- aGUGgcgcGGCUgcGGCGgCGCGCCGGc -3' miRNA: 3'- aUAUaau-UCGAaaCUGCgGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 114855 | 0.69 | 0.992188 |
Target: 5'- gGUGUgcgaacuGGUgcUGACGcCCGCGUCGGc -3' miRNA: 3'- aUAUAau-----UCGaaACUGC-GGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 113384 | 0.67 | 0.998096 |
Target: 5'- --gGUUAcGGCg--GACGCCGCgGgCGGg -3' miRNA: 3'- auaUAAU-UCGaaaCUGCGGCG-CgGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 112063 | 0.69 | 0.993206 |
Target: 5'- -------uGCUggagGACGCCGCGgUGGg -3' miRNA: 3'- auauaauuCGAaa--CUGCGGCGCgGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 111204 | 0.66 | 0.999519 |
Target: 5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3' miRNA: 3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 110822 | 0.68 | 0.996826 |
Target: 5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3' miRNA: 3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 109502 | 0.7 | 0.98979 |
Target: 5'- ------cAGCga-GugGUCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCugCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 108220 | 0.66 | 0.999692 |
Target: 5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3' miRNA: 3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 108194 | 0.67 | 0.999103 |
Target: 5'- -------cGCcggUGGCGCCGCcGCCGa -3' miRNA: 3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 107441 | 0.67 | 0.998679 |
Target: 5'- -----aAAGCgcgGAcCGCCGCGCUGu -3' miRNA: 3'- auauaaUUCGaaaCU-GCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 105397 | 0.67 | 0.998909 |
Target: 5'- -------cGCg--GGCGCCaaaucGCGCCGGg -3' miRNA: 3'- auauaauuCGaaaCUGCGG-----CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 105302 | 0.68 | 0.996826 |
Target: 5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3' miRNA: 3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 103325 | 0.66 | 0.999692 |
Target: 5'- -----cAGGCgcUGACGCgccaGCGCCGu -3' miRNA: 3'- auauaaUUCGaaACUGCGg---CGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 103309 | 0.66 | 0.999614 |
Target: 5'- -----gAAGCg--GACGCgGCGCUGc -3' miRNA: 3'- auauaaUUCGaaaCUGCGgCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 102329 | 0.75 | 0.873959 |
Target: 5'- cGUcgUGcGCgugGGCGCCGaCGCCGGg -3' miRNA: 3'- aUAuaAUuCGaaaCUGCGGC-GCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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