Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 99448 | 0.66 | 0.999519 |
Target: 5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3' miRNA: 3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 98967 | 0.68 | 0.99564 |
Target: 5'- ------uGGCUggUGAgGCgGUGCCGGg -3' miRNA: 3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 98166 | 0.69 | 0.992188 |
Target: 5'- -------uGCUgacGGCGCUGCGCCGa -3' miRNA: 3'- auauaauuCGAaa-CUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 91584 | 0.69 | 0.993206 |
Target: 5'- cGUcgUAGGCguaguaGCCGCGCCGc -3' miRNA: 3'- aUAuaAUUCGaaacugCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 90155 | 0.7 | 0.988392 |
Target: 5'- ------cAGCagcGGCGCCGCcGCCGGa -3' miRNA: 3'- auauaauUCGaaaCUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 89823 | 0.66 | 0.999614 |
Target: 5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3' miRNA: 3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 87923 | 0.74 | 0.92565 |
Target: 5'- ------uGGCUggc-CGCCGCGCCGGg -3' miRNA: 3'- auauaauUCGAaacuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 86580 | 0.69 | 0.994924 |
Target: 5'- -----gAGGCaggGcACGCCGCaGCCGGg -3' miRNA: 3'- auauaaUUCGaaaC-UGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 86529 | 0.69 | 0.994924 |
Target: 5'- ------cGGCcccgGACGCCGUGCCGc -3' miRNA: 3'- auauaauUCGaaa-CUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 85760 | 0.67 | 0.999103 |
Target: 5'- ----aUGAGCgagGugGCCaGCGCCu- -3' miRNA: 3'- auauaAUUCGaaaCugCGG-CGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 85212 | 0.74 | 0.92565 |
Target: 5'- -------uGCgucacccGGCGCCGCGCCGGa -3' miRNA: 3'- auauaauuCGaaa----CUGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 75984 | 0.66 | 0.999519 |
Target: 5'- -----gAAGUc-UGGCGCCGgcCGCCGGu -3' miRNA: 3'- auauaaUUCGaaACUGCGGC--GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 73335 | 0.66 | 0.999509 |
Target: 5'- -cUGUUGuGCUUcaagUGcaacuacGCGCCGCGCaCGGc -3' miRNA: 3'- auAUAAUuCGAA----AC-------UGCGGCGCG-GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 72286 | 0.66 | 0.999614 |
Target: 5'- ------cAGCgccGcCGCCGCGCUGGc -3' miRNA: 3'- auauaauUCGaaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 70706 | 0.76 | 0.858701 |
Target: 5'- -----cAAGCUgcgucGGCGCCuGCGCCGGa -3' miRNA: 3'- auauaaUUCGAaa---CUGCGG-CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 68384 | 0.68 | 0.996271 |
Target: 5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3' miRNA: 3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 65971 | 0.67 | 0.998679 |
Target: 5'- aAUGgaauGGCUggacGugGCCaCGCCGGa -3' miRNA: 3'- aUAUaau-UCGAaa--CugCGGcGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 64527 | 0.67 | 0.998096 |
Target: 5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3' miRNA: 3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 63960 | 0.7 | 0.986851 |
Target: 5'- -----gGAGCUgcUGGCGCgGCGCCa- -3' miRNA: 3'- auauaaUUCGAa-ACUGCGgCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 62632 | 0.66 | 0.999614 |
Target: 5'- -----cGAGCUUcGGCGCCGC-CCu- -3' miRNA: 3'- auauaaUUCGAAaCUGCGGCGcGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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