Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 62214 | 0.69 | 0.993206 |
Target: 5'- -----gAGGCguugGACGCCGUGCUGc -3' miRNA: 3'- auauaaUUCGaaa-CUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 62109 | 0.68 | 0.996826 |
Target: 5'- -------cGCUUcGGCGcCCGCGCgGGg -3' miRNA: 3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 61693 | 0.68 | 0.99731 |
Target: 5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3' miRNA: 3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 59428 | 0.66 | 0.999519 |
Target: 5'- -------cGCgacagcGGCGCCGCcGCCGGc -3' miRNA: 3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 57833 | 0.66 | 0.999519 |
Target: 5'- -----gAAGCUcggccggUGACGCCGaaCGCCGu -3' miRNA: 3'- auauaaUUCGAa------ACUGCGGC--GCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 56463 | 0.66 | 0.999692 |
Target: 5'- -----cGAGa---GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCgaaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 55537 | 0.68 | 0.996826 |
Target: 5'- ------cAGCga--GCGCCGCGCCGa -3' miRNA: 3'- auauaauUCGaaacUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 49466 | 0.67 | 0.998909 |
Target: 5'- -----aAAGaCgaUGACGCCGUGCCa- -3' miRNA: 3'- auauaaUUC-GaaACUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 46807 | 0.69 | 0.991052 |
Target: 5'- ------uGGuCUggaUGACGCCGCcGCCGGu -3' miRNA: 3'- auauaauUC-GAa--ACUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 44235 | 0.7 | 0.983302 |
Target: 5'- -----cAAGCUcUGcCGCCGUGCgCGGg -3' miRNA: 3'- auauaaUUCGAaACuGCGGCGCG-GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 39018 | 0.67 | 0.998909 |
Target: 5'- -----gGAGCg--GGCGCCGCcgaaggauuGCUGGg -3' miRNA: 3'- auauaaUUCGaaaCUGCGGCG---------CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 38469 | 0.67 | 0.99841 |
Target: 5'- ----cUGGGCUcUGGCGgUggGCGCCGGc -3' miRNA: 3'- auauaAUUCGAaACUGCgG--CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 38067 | 0.66 | 0.999405 |
Target: 5'- cUGUAcagGGGUUgugGugGCCGuCGCUGGc -3' miRNA: 3'- -AUAUaa-UUCGAaa-CugCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 34702 | 0.67 | 0.998096 |
Target: 5'- cGUcgUAGGCgaagacGGCGCCGUGCgCGu -3' miRNA: 3'- aUAuaAUUCGaaa---CUGCGGCGCG-GCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 32866 | 0.68 | 0.997692 |
Target: 5'- -----gAGGCcgaucggUUUGGCGcCCGCGCCGc -3' miRNA: 3'- auauaaUUCG-------AAACUGC-GGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 31716 | 0.7 | 0.988392 |
Target: 5'- cAUGUgcgcguGCUggGACGCCGCgGCCa- -3' miRNA: 3'- aUAUAauu---CGAaaCUGCGGCG-CGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 30226 | 0.67 | 0.998096 |
Target: 5'- ------cGGCcgUUGGCGUCGCGCUGc -3' miRNA: 3'- auauaauUCGa-AACUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 27247 | 0.66 | 0.999692 |
Target: 5'- ------cGGCUgcuacgUGGCGCUGCuGUCGGu -3' miRNA: 3'- auauaauUCGAa-----ACUGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 24616 | 0.66 | 0.999267 |
Target: 5'- cGUGUgccAGGag--GACcCCGCGCCGGu -3' miRNA: 3'- aUAUAa--UUCgaaaCUGcGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 19860 | 0.68 | 0.996502 |
Target: 5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3' miRNA: 3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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