Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 18919 | 0.67 | 0.998909 |
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Target: 5'- -----gAAGgg-UGGCGCCGCgcGCCGGc -3' miRNA: 3'- auauaaUUCgaaACUGCGGCG--CGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 17403 | 1.11 | 0.014335 |
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Target: 5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3' miRNA: 3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 17355 | 0.66 | 0.999519 |
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Target: 5'- -----cGGGCcgUGACGCCgGCGCggCGGc -3' miRNA: 3'- auauaaUUCGaaACUGCGG-CGCG--GCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 14738 | 0.72 | 0.965097 |
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Target: 5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3' miRNA: 3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 14136 | 0.68 | 0.997731 |
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Target: 5'- -----aGGGCUggcacgUGACGuuGCGCCu- -3' miRNA: 3'- auauaaUUCGAa-----ACUGCggCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 13917 | 0.69 | 0.992188 |
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Target: 5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3' miRNA: 3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 12672 | 0.68 | 0.997731 |
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Target: 5'- -----cAAGUggUUGguGCGCCGCGaCCGGu -3' miRNA: 3'- auauaaUUCGa-AAC--UGCGGCGC-GGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 11922 | 0.74 | 0.914187 |
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Target: 5'- uUGUGUUAGcgccGCUUUGACGCCGUGUUu- -3' miRNA: 3'- -AUAUAAUU----CGAAACUGCGGCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 2604 | 0.69 | 0.994115 |
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Target: 5'- -------cGCUc-GACGCCGUGCCGa -3' miRNA: 3'- auauaauuCGAaaCUGCGGCGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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