Results 101 - 120 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 141201 | 0.72 | 0.965097 |
Target: 5'- ------uGGCcgUGGCGCUGCGCCGc -3' miRNA: 3'- auauaauUCGaaACUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 14738 | 0.72 | 0.965097 |
Target: 5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3' miRNA: 3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 203402 | 0.72 | 0.954104 |
Target: 5'- -----gAGGCUc-GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCGAaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 166242 | 0.73 | 0.931009 |
Target: 5'- -------cGCgg-GACGCCGCGCCGc -3' miRNA: 3'- auauaauuCGaaaCUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 197257 | 0.78 | 0.770858 |
Target: 5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3' miRNA: 3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 128961 | 0.69 | 0.993206 |
Target: 5'- -----gGGGCUggcGGCGUgGCGCUGGa -3' miRNA: 3'- auauaaUUCGAaa-CUGCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 209366 | 0.69 | 0.993206 |
Target: 5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3' miRNA: 3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 181938 | 0.68 | 0.99731 |
Target: 5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 135604 | 0.68 | 0.99731 |
Target: 5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3' miRNA: 3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 110822 | 0.68 | 0.996826 |
Target: 5'- ------cGGCcgUUGcGCGCCGCcGCCGGc -3' miRNA: 3'- auauaauUCGa-AAC-UGCGGCG-CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 105302 | 0.68 | 0.996826 |
Target: 5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3' miRNA: 3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 19860 | 0.68 | 0.996502 |
Target: 5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3' miRNA: 3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 68384 | 0.68 | 0.996271 |
Target: 5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3' miRNA: 3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 225736 | 0.68 | 0.99564 |
Target: 5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3' miRNA: 3'- auauaAUUCGA--AACUGCgGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 98967 | 0.68 | 0.99564 |
Target: 5'- ------uGGCUggUGAgGCgGUGCCGGg -3' miRNA: 3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 169297 | 0.69 | 0.994924 |
Target: 5'- -----cGGGCUcggUGACGUCG-GCCGGc -3' miRNA: 3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 86529 | 0.69 | 0.994924 |
Target: 5'- ------cGGCcccgGACGCCGUGCCGc -3' miRNA: 3'- auauaauUCGaaa-CUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 211954 | 0.69 | 0.994115 |
Target: 5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3' miRNA: 3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 167060 | 0.69 | 0.994115 |
Target: 5'- -------cGCUcaUGACGCCGgUGCCGGc -3' miRNA: 3'- auauaauuCGAa-ACUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 2604 | 0.69 | 0.994115 |
Target: 5'- -------cGCUc-GACGCCGUGCCGa -3' miRNA: 3'- auauaauuCGAaaCUGCGGCGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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