Results 121 - 129 of 129 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 105302 | 0.68 | 0.996826 |
|
Target: 5'- cAUGgcGGGCgugggGACGCCGCGCg-- -3' miRNA: 3'- aUAUaaUUCGaaa--CUGCGGCGCGgcc -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 19860 | 0.68 | 0.996502 |
|
Target: 5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3' miRNA: 3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 68384 | 0.68 | 0.996271 |
|
Target: 5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3' miRNA: 3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 225736 | 0.68 | 0.99564 |
|
Target: 5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3' miRNA: 3'- auauaAUUCGA--AACUGCgGCGCGGCc -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 98967 | 0.68 | 0.99564 |
|
Target: 5'- ------uGGCUggUGAgGCgGUGCCGGg -3' miRNA: 3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 169297 | 0.69 | 0.994924 |
|
Target: 5'- -----cGGGCUcggUGACGUCG-GCCGGc -3' miRNA: 3'- auauaaUUCGAa--ACUGCGGCgCGGCC- -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 86529 | 0.69 | 0.994924 |
|
Target: 5'- ------cGGCcccgGACGCCGUGCCGc -3' miRNA: 3'- auauaauUCGaaa-CUGCGGCGCGGCc -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 211954 | 0.69 | 0.994115 |
|
Target: 5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3' miRNA: 3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5' |
|||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 17403 | 1.11 | 0.014335 |
|
Target: 5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3' miRNA: 3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home