miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 126780 0.67 0.998909
Target:  5'- -----cAGGCccUGGCGCUGCGCgUGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 49466 0.67 0.998909
Target:  5'- -----aAAGaCgaUGACGCCGUGCCa- -3'
miRNA:   3'- auauaaUUC-GaaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 166500 0.68 0.996826
Target:  5'- ------cAGCgg-GGCGCCGCGuCCGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCGC-GGCc -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 226841 0.68 0.997731
Target:  5'- -------cGCcc-GcCGCCGCGCCGGg -3'
miRNA:   3'- auauaauuCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 34702 0.67 0.998096
Target:  5'- cGUcgUAGGCgaagacGGCGCCGUGCgCGu -3'
miRNA:   3'- aUAuaAUUCGaaa---CUGCGGCGCG-GCc -5'
14272 5' -49.6 NC_003521.1 + 30226 0.67 0.998096
Target:  5'- ------cGGCcgUUGGCGUCGCGCUGc -3'
miRNA:   3'- auauaauUCGa-AACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 113384 0.67 0.998096
Target:  5'- --gGUUAcGGCg--GACGCCGCgGgCGGg -3'
miRNA:   3'- auaUAAU-UCGaaaCUGCGGCG-CgGCC- -5'
14272 5' -49.6 NC_003521.1 + 155641 0.67 0.998096
Target:  5'- gGUGgu-AGCagaaGCGCCGUGCUGGg -3'
miRNA:   3'- aUAUaauUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 64527 0.67 0.998096
Target:  5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3'
miRNA:   3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5'
14272 5' -49.6 NC_003521.1 + 38469 0.67 0.99841
Target:  5'- ----cUGGGCUcUGGCGgUggGCGCCGGc -3'
miRNA:   3'- auauaAUUCGAaACUGCgG--CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 65971 0.67 0.998679
Target:  5'- aAUGgaauGGCUggacGugGCCaCGCCGGa -3'
miRNA:   3'- aUAUaau-UCGAaa--CugCGGcGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 211168 0.67 0.998821
Target:  5'- gGUGUUuuucggaGGCGCCGCGCuCGGu -3'
miRNA:   3'- aUAUAAuucgaaaCUGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 39018 0.67 0.998909
Target:  5'- -----gGAGCg--GGCGCCGCcgaaggauuGCUGGg -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCG---------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.