Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14272 | 5' | -49.6 | NC_003521.1 | + | 113384 | 0.67 | 0.998096 |
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Target: 5'- --gGUUAcGGCg--GACGCCGCgGgCGGg -3' miRNA: 3'- auaUAAU-UCGaaaCUGCGGCG-CgGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 155641 | 0.67 | 0.998096 |
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Target: 5'- gGUGgu-AGCagaaGCGCCGUGCUGGg -3' miRNA: 3'- aUAUaauUCGaaacUGCGGCGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 64527 | 0.67 | 0.998096 |
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Target: 5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3' miRNA: 3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 38469 | 0.67 | 0.99841 |
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Target: 5'- ----cUGGGCUcUGGCGgUggGCGCCGGc -3' miRNA: 3'- auauaAUUCGAaACUGCgG--CGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 65971 | 0.67 | 0.998679 |
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Target: 5'- aAUGgaauGGCUggacGugGCCaCGCCGGa -3' miRNA: 3'- aUAUaau-UCGAaa--CugCGGcGCGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 211168 | 0.67 | 0.998821 |
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Target: 5'- gGUGUUuuucggaGGCGCCGCGCuCGGu -3' miRNA: 3'- aUAUAAuucgaaaCUGCGGCGCG-GCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 39018 | 0.67 | 0.998909 |
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Target: 5'- -----gGAGCg--GGCGCCGCcgaaggauuGCUGGg -3' miRNA: 3'- auauaaUUCGaaaCUGCGGCG---------CGGCC- -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 49466 | 0.67 | 0.998909 |
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Target: 5'- -----aAAGaCgaUGACGCCGUGCCa- -3' miRNA: 3'- auauaaUUC-GaaACUGCGGCGCGGcc -5' |
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| 14272 | 5' | -49.6 | NC_003521.1 | + | 130302 | 0.66 | 0.999692 |
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Target: 5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3' miRNA: 3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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