miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 176055 0.67 0.998679
Target:  5'- -------cGCUUggGAucgcccggUGCCGCGCCGGc -3'
miRNA:   3'- auauaauuCGAAa-CU--------GCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 174247 0.66 0.999519
Target:  5'- -----gGAGCUcaGACGCacguuGCGCUGGc -3'
miRNA:   3'- auauaaUUCGAaaCUGCGg----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 175721 0.66 0.999509
Target:  5'- ------cAGCUgucGGCGCCgcucuuccuccugGCGCCGGu -3'
miRNA:   3'- auauaauUCGAaa-CUGCGG-------------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 221764 0.67 0.99841
Target:  5'- ------cAGCgucuGCGCCGCGCCGc -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 209366 0.69 0.993206
Target:  5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3'
miRNA:   3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 141201 0.72 0.965097
Target:  5'- ------uGGCcgUGGCGCUGCGCCGc -3'
miRNA:   3'- auauaauUCGaaACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 98967 0.68 0.99564
Target:  5'- ------uGGCUggUGAgGCgGUGCCGGg -3'
miRNA:   3'- auauaauUCGAa-ACUgCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 12672 0.68 0.997731
Target:  5'- -----cAAGUggUUGguGCGCCGCGaCCGGu -3'
miRNA:   3'- auauaaUUCGa-AAC--UGCGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 181938 0.68 0.99731
Target:  5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 86529 0.69 0.994924
Target:  5'- ------cGGCcccgGACGCCGUGCCGc -3'
miRNA:   3'- auauaauUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 211163 0.69 0.991052
Target:  5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3'
miRNA:   3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 170947 0.67 0.999103
Target:  5'- cUAUGgccUGGGCg-UGGCGCUGCGCggCGGc -3'
miRNA:   3'- -AUAUa--AUUCGaaACUGCGGCGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 108194 0.67 0.999103
Target:  5'- -------cGCcggUGGCGCCGCcGCCGa -3'
miRNA:   3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 119199 0.67 0.99841
Target:  5'- -----aAGGacgUGGCGCUGCGCCaGGu -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCGCGG-CC- -5'
14272 5' -49.6 NC_003521.1 + 201239 0.66 0.999405
Target:  5'- -----aGGGCag-GAcCGCCGaCGCCGGc -3'
miRNA:   3'- auauaaUUCGaaaCU-GCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 108220 0.66 0.999692
Target:  5'- -----gAAGCcguugcgGACGCCGaCGCCGc -3'
miRNA:   3'- auauaaUUCGaaa----CUGCGGC-GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 166211 0.66 0.999519
Target:  5'- -------cGCUgUUGGCGCggcggcgaggCGCGCCGGc -3'
miRNA:   3'- auauaauuCGA-AACUGCG----------GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 120241 0.66 0.999405
Target:  5'- -----gGAGCc--GGCgGCCGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaaCUG-CGGCGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.