miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 184362 0.67 0.998096
Target:  5'- -----cGGGCcgUGGCGCgGCGCCu- -3'
miRNA:   3'- auauaaUUCGaaACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 139188 0.67 0.99841
Target:  5'- -------cGCUgaacgUGACGCgcuaccaGCGCCGGg -3'
miRNA:   3'- auauaauuCGAa----ACUGCGg------CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 72286 0.66 0.999614
Target:  5'- ------cAGCgccGcCGCCGCGCUGGc -3'
miRNA:   3'- auauaauUCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 17355 0.66 0.999519
Target:  5'- -----cGGGCcgUGACGCCgGCGCggCGGc -3'
miRNA:   3'- auauaaUUCGaaACUGCGG-CGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 14136 0.68 0.997731
Target:  5'- -----aGGGCUggcacgUGACGuuGCGCCu- -3'
miRNA:   3'- auauaaUUCGAa-----ACUGCggCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 68384 0.68 0.996271
Target:  5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3'
miRNA:   3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 135604 0.68 0.99731
Target:  5'- -------cGCUuuuucUUGACGCCGCGCagcucgCGGg -3'
miRNA:   3'- auauaauuCGA-----AACUGCGGCGCG------GCC- -5'
14272 5' -49.6 NC_003521.1 + 89823 0.66 0.999614
Target:  5'- -----aAGGCUUUcuccacguaGACGCCGUaGCCGa -3'
miRNA:   3'- auauaaUUCGAAA---------CUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 126067 0.72 0.96831
Target:  5'- cGUGUccAGCagcUGugGCCGCGCCa- -3'
miRNA:   3'- aUAUAauUCGaa-ACugCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 87923 0.74 0.92565
Target:  5'- ------uGGCUggc-CGCCGCGCCGGg -3'
miRNA:   3'- auauaauUCGAaacuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 62109 0.68 0.996826
Target:  5'- -------cGCUUcGGCGcCCGCGCgGGg -3'
miRNA:   3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5'
14272 5' -49.6 NC_003521.1 + 224085 0.72 0.957999
Target:  5'- ------cGGCg--GGCGCgCGCGCCGGc -3'
miRNA:   3'- auauaauUCGaaaCUGCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 56463 0.66 0.999692
Target:  5'- -----cGAGa---GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCgaaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 55537 0.68 0.996826
Target:  5'- ------cAGCga--GCGCCGCGCCGa -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 149396 0.68 0.996826
Target:  5'- ----gUGGGCUUcGugGCCGUgGCCGu -3'
miRNA:   3'- auauaAUUCGAAaCugCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 232820 0.68 0.996271
Target:  5'- -----gGAGCUacGGCGCUGCcCCGGu -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.