miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14273 3' -67.5 NC_003521.1 + 90837 0.66 0.598879
Target:  5'- gCGGCGgguGCGCgCCGCCCgugcugcugcUGACCacgGCCGaGGg -3'
miRNA:   3'- -GCUGC---CGCG-GGCGGG----------GCUGG---CGGC-CC- -5'
14273 3' -67.5 NC_003521.1 + 74145 0.66 0.598879
Target:  5'- aCGugGcGCGCCacgggGCCCagguGCCGCUGGc -3'
miRNA:   3'- -GCugC-CGCGGg----CGGGgc--UGGCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 62237 0.66 0.598879
Target:  5'- gGAgGGCGCCCGgCUgGACgCGCgGcuGGa -3'
miRNA:   3'- gCUgCCGCGGGCgGGgCUG-GCGgC--CC- -5'
14273 3' -67.5 NC_003521.1 + 63164 0.66 0.598879
Target:  5'- aCGAuCGaCGCgCCGCCCCaGACUaGCUGGa -3'
miRNA:   3'- -GCU-GCcGCG-GGCGGGG-CUGG-CGGCCc -5'
14273 3' -67.5 NC_003521.1 + 148429 0.66 0.598879
Target:  5'- ---gGGCGgCCGCgCCGGCgGCUccaGGGg -3'
miRNA:   3'- gcugCCGCgGGCGgGGCUGgCGG---CCC- -5'
14273 3' -67.5 NC_003521.1 + 74911 0.66 0.598879
Target:  5'- gCGGCGGUGgagUCGgCCCGGCaGCgCGGGg -3'
miRNA:   3'- -GCUGCCGCg--GGCgGGGCUGgCG-GCCC- -5'
14273 3' -67.5 NC_003521.1 + 71357 0.66 0.598879
Target:  5'- aCGACGacGCGCCUGgcgacgaaCCCGccGCCGCCGa- -3'
miRNA:   3'- -GCUGC--CGCGGGCg-------GGGC--UGGCGGCcc -5'
14273 3' -67.5 NC_003521.1 + 17416 0.66 0.598879
Target:  5'- uGACGccGCGCCggggCGCCacaCGGCCcgcGUCGGGg -3'
miRNA:   3'- gCUGC--CGCGG----GCGGg--GCUGG---CGGCCC- -5'
14273 3' -67.5 NC_003521.1 + 30792 0.66 0.598879
Target:  5'- uGugGGCGCgguagCGCaCCGAgggcCCGCCGGc -3'
miRNA:   3'- gCugCCGCGg----GCGgGGCU----GGCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 111088 0.66 0.598879
Target:  5'- aGACGGCGCggaCGCgCUCGGCguCGaCGGGc -3'
miRNA:   3'- gCUGCCGCGg--GCG-GGGCUG--GCgGCCC- -5'
14273 3' -67.5 NC_003521.1 + 61860 0.66 0.598879
Target:  5'- -cGCGGCGCCUGUCCaugCGACCaccaCGGa -3'
miRNA:   3'- gcUGCCGCGGGCGGG---GCUGGcg--GCCc -5'
14273 3' -67.5 NC_003521.1 + 108533 0.66 0.598879
Target:  5'- uCGACGGCGaCCUGgucaCCCgGACC-CUGGc -3'
miRNA:   3'- -GCUGCCGC-GGGC----GGGgCUGGcGGCCc -5'
14273 3' -67.5 NC_003521.1 + 196663 0.66 0.598879
Target:  5'- cCGACGGCGCCagcuGCugCUCGACgacggCGUCGGa -3'
miRNA:   3'- -GCUGCCGCGGg---CG--GGGCUG-----GCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 180063 0.66 0.598879
Target:  5'- aGGCGGCGgggauucuCCCGCggCGACUGCCGc- -3'
miRNA:   3'- gCUGCCGC--------GGGCGggGCUGGCGGCcc -5'
14273 3' -67.5 NC_003521.1 + 192459 0.66 0.598879
Target:  5'- gCGGCGGCGCCgGuuuCCaggaCGGCgGUCGGc -3'
miRNA:   3'- -GCUGCCGCGGgC---GGg---GCUGgCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 14748 0.66 0.598879
Target:  5'- uGACGG-GCCgGCC---GCgGCCGGGg -3'
miRNA:   3'- gCUGCCgCGGgCGGggcUGgCGGCCC- -5'
14273 3' -67.5 NC_003521.1 + 11751 0.66 0.598879
Target:  5'- uCGACGG-GCCCGaCUCG-CC-CUGGGg -3'
miRNA:   3'- -GCUGCCgCGGGCgGGGCuGGcGGCCC- -5'
14273 3' -67.5 NC_003521.1 + 105478 0.66 0.59798
Target:  5'- aGACGGCGCgCGCgggagggaggcaaCCCGcCCGaccCCGGc -3'
miRNA:   3'- gCUGCCGCGgGCG-------------GGGCuGGC---GGCCc -5'
14273 3' -67.5 NC_003521.1 + 111593 0.66 0.59259
Target:  5'- gGACuGCGUgguagucuuccucUCGCCCCGcggcgacgaggucgaACCGCCGGc -3'
miRNA:   3'- gCUGcCGCG-------------GGCGGGGC---------------UGGCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 139779 0.66 0.589898
Target:  5'- cCGuCGGCGgCCGCCauGgaGCUGCaCGGGc -3'
miRNA:   3'- -GCuGCCGCgGGCGGggC--UGGCG-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.