miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14273 3' -67.5 NC_003521.1 + 17143 0.66 0.589898
Target:  5'- cCGGCGcGCuucGCCCGacccuCCCUGGCCaaCGGGg -3'
miRNA:   3'- -GCUGC-CG---CGGGC-----GGGGCUGGcgGCCC- -5'
14273 3' -67.5 NC_003521.1 + 135373 0.66 0.589898
Target:  5'- gCGGCGGUuaUCGCCCgCGGgCGCCa-- -3'
miRNA:   3'- -GCUGCCGcgGGCGGG-GCUgGCGGccc -5'
14273 3' -67.5 NC_003521.1 + 129454 0.66 0.589898
Target:  5'- cCGuCGcCGCuaGUCCCGG-CGCCGGGa -3'
miRNA:   3'- -GCuGCcGCGggCGGGGCUgGCGGCCC- -5'
14273 3' -67.5 NC_003521.1 + 107342 0.66 0.589898
Target:  5'- -aGCGGCGCCaggugauCCUCGACC-UCGGGc -3'
miRNA:   3'- gcUGCCGCGGgc-----GGGGCUGGcGGCCC- -5'
14273 3' -67.5 NC_003521.1 + 139779 0.66 0.589898
Target:  5'- cCGuCGGCGgCCGCCauGgaGCUGCaCGGGc -3'
miRNA:   3'- -GCuGCCGCgGGCGGggC--UGGCG-GCCC- -5'
14273 3' -67.5 NC_003521.1 + 89895 0.66 0.589898
Target:  5'- uGACcGCGCUCGgCCC-ACaCGCCGuGGa -3'
miRNA:   3'- gCUGcCGCGGGCgGGGcUG-GCGGC-CC- -5'
14273 3' -67.5 NC_003521.1 + 170850 0.66 0.580942
Target:  5'- aGACGcGCGUCgGCUUCu-CCGCgGGGg -3'
miRNA:   3'- gCUGC-CGCGGgCGGGGcuGGCGgCCC- -5'
14273 3' -67.5 NC_003521.1 + 169774 0.66 0.580942
Target:  5'- -cAUGGCGCCgCGCUuuGGgCGCUcgaGGGa -3'
miRNA:   3'- gcUGCCGCGG-GCGGggCUgGCGG---CCC- -5'
14273 3' -67.5 NC_003521.1 + 119859 0.66 0.580942
Target:  5'- uGGCGGacCGCaaaCCGCCCCGcCCccugccccucGCCGGa -3'
miRNA:   3'- gCUGCC--GCG---GGCGGGGCuGG----------CGGCCc -5'
14273 3' -67.5 NC_003521.1 + 148824 0.66 0.580942
Target:  5'- gCGGCGacCGCCUGCCCuCGGCCGa-GGu -3'
miRNA:   3'- -GCUGCc-GCGGGCGGG-GCUGGCggCCc -5'
14273 3' -67.5 NC_003521.1 + 212729 0.66 0.580942
Target:  5'- gGGCGaGCGCCUGCUCgGcuuccCCGCCGu- -3'
miRNA:   3'- gCUGC-CGCGGGCGGGgCu----GGCGGCcc -5'
14273 3' -67.5 NC_003521.1 + 226961 0.66 0.580942
Target:  5'- uGGCGGCG-CCGCCCgcagaGACCcccgcGCCGa- -3'
miRNA:   3'- gCUGCCGCgGGCGGGg----CUGG-----CGGCcc -5'
14273 3' -67.5 NC_003521.1 + 80491 0.66 0.580942
Target:  5'- aCGACGGaggccaccgcgcCGCCCacgGCUCCGAUgGCCGu- -3'
miRNA:   3'- -GCUGCC------------GCGGG---CGGGGCUGgCGGCcc -5'
14273 3' -67.5 NC_003521.1 + 136657 0.66 0.580942
Target:  5'- aCGcCGuGCGaCCCGCgCCG-CCGCCGc- -3'
miRNA:   3'- -GCuGC-CGC-GGGCGgGGCuGGCGGCcc -5'
14273 3' -67.5 NC_003521.1 + 122675 0.66 0.580942
Target:  5'- uCGA-GGCGCCCaGCaCCGACaGCUGcGGg -3'
miRNA:   3'- -GCUgCCGCGGG-CGgGGCUGgCGGC-CC- -5'
14273 3' -67.5 NC_003521.1 + 22596 0.66 0.580942
Target:  5'- uGACGGCcCCUGCggucgCCUGACCuccguugcCCGGGa -3'
miRNA:   3'- gCUGCCGcGGGCG-----GGGCUGGc-------GGCCC- -5'
14273 3' -67.5 NC_003521.1 + 115102 0.66 0.580942
Target:  5'- -uGCGcCGUcgCCGCCCCcgucguGACCGCCGGc -3'
miRNA:   3'- gcUGCcGCG--GGCGGGG------CUGGCGGCCc -5'
14273 3' -67.5 NC_003521.1 + 43641 0.66 0.580942
Target:  5'- aGGCGGCGgCCGCCgCCGGagaGCagaGaGGa -3'
miRNA:   3'- gCUGCCGCgGGCGG-GGCUgg-CGg--C-CC- -5'
14273 3' -67.5 NC_003521.1 + 183392 0.66 0.580048
Target:  5'- gCGGCGuGCaggaGCCCGUCCgcgagacggugggCGACCGCaCGGc -3'
miRNA:   3'- -GCUGC-CG----CGGGCGGG-------------GCUGGCG-GCCc -5'
14273 3' -67.5 NC_003521.1 + 92139 0.66 0.580048
Target:  5'- gGGCGGCGgggcuuCCCGgcuccuuCCaCCGGCuCGCCcGGGg -3'
miRNA:   3'- gCUGCCGC------GGGC-------GG-GGCUG-GCGG-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.