miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14273 5' -55.9 NC_003521.1 + 30910 0.66 0.964682
Target:  5'- cUGCgGCAGGcgagagcGGuccuGGGGCAGUCGcCGUGc -3'
miRNA:   3'- -ACGgCGUCCu------CC----UCCUGUUAGU-GCAC- -5'
14273 5' -55.9 NC_003521.1 + 166941 0.66 0.96436
Target:  5'- gGCCuugcggaucucggGCGGGGGGAGG-CucucGUCGCuGUGg -3'
miRNA:   3'- aCGG-------------CGUCCUCCUCCuGu---UAGUG-CAC- -5'
14273 5' -55.9 NC_003521.1 + 197078 0.66 0.963711
Target:  5'- cGUCgaGCAGGAGGAGcGCGAgagccccaagaaccUCugGUGu -3'
miRNA:   3'- aCGG--CGUCCUCCUCcUGUU--------------AGugCAC- -5'
14273 5' -55.9 NC_003521.1 + 99508 0.66 0.961374
Target:  5'- gUGCCGCuGGAGGgcgcccAGGAUcaGGUCGgagacCGUGc -3'
miRNA:   3'- -ACGGCGuCCUCC------UCCUG--UUAGU-----GCAC- -5'
14273 5' -55.9 NC_003521.1 + 186544 0.66 0.961374
Target:  5'- -uCCGUGGGAGGcAGGGCcggCACGa- -3'
miRNA:   3'- acGGCGUCCUCC-UCCUGuuaGUGCac -5'
14273 5' -55.9 NC_003521.1 + 136298 0.66 0.961032
Target:  5'- cGCCucaaaaaGCAGGuGGAGGACAGUauuUACu-- -3'
miRNA:   3'- aCGG-------CGUCCuCCUCCUGUUA---GUGcac -5'
14273 5' -55.9 NC_003521.1 + 144676 0.66 0.961032
Target:  5'- uUGCUGCGaGAGGAgagagagcgGGACGccgccgcAUCAUGUGg -3'
miRNA:   3'- -ACGGCGUcCUCCU---------CCUGU-------UAGUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 18780 0.66 0.960688
Target:  5'- --aCGCAGGcgguGGAGGGCcagcgcugcuuUCGCGUGg -3'
miRNA:   3'- acgGCGUCCu---CCUCCUGuu---------AGUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 200260 0.66 0.957858
Target:  5'- uUGCCGUGGccGGGAucGGugAGUCACGg- -3'
miRNA:   3'- -ACGGCGUCc-UCCU--CCugUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 112073 0.66 0.957858
Target:  5'- cGCCGCGGuGGGGAucagGGGCGGcUgGCGg- -3'
miRNA:   3'- aCGGCGUC-CUCCU----CCUGUU-AgUGCac -5'
14273 5' -55.9 NC_003521.1 + 32 0.66 0.957858
Target:  5'- uUGCCGUGGccGGGAucGGugAGUCACGg- -3'
miRNA:   3'- -ACGGCGUCc-UCCU--CCugUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 240581 0.66 0.957858
Target:  5'- uUGCCGUGGccGGGAucGGugAGUCACGg- -3'
miRNA:   3'- -ACGGCGUCc-UCCU--CCugUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 197280 0.66 0.954128
Target:  5'- gGCgGCGGGgagcGGGAGGGCGGcUCgACGg- -3'
miRNA:   3'- aCGgCGUCC----UCCUCCUGUU-AG-UGCac -5'
14273 5' -55.9 NC_003521.1 + 49081 0.66 0.954128
Target:  5'- gGaCCGUcGGAcGGGGGGCGAUauccacaaagugCGCGUGg -3'
miRNA:   3'- aC-GGCGuCCU-CCUCCUGUUA------------GUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 136264 0.66 0.950182
Target:  5'- cGCCGacgugauuCAGGAGGuGGugGAgCGCGa- -3'
miRNA:   3'- aCGGC--------GUCCUCCuCCugUUaGUGCac -5'
14273 5' -55.9 NC_003521.1 + 100586 0.66 0.950182
Target:  5'- cGCCGUAGGGgccGGuGGACGAg-GCGg- -3'
miRNA:   3'- aCGGCGUCCU---CCuCCUGUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 150803 0.66 0.950182
Target:  5'- aGCCGcCAGGGGGcgcuGGACcgaaacaACGUGu -3'
miRNA:   3'- aCGGC-GUCCUCCu---CCUGuuag---UGCAC- -5'
14273 5' -55.9 NC_003521.1 + 235580 0.66 0.950182
Target:  5'- -cCCGCGGGAcgugcgGGAGGACGAgagGCGg- -3'
miRNA:   3'- acGGCGUCCU------CCUCCUGUUag-UGCac -5'
14273 5' -55.9 NC_003521.1 + 188681 0.66 0.950182
Target:  5'- cGCUGaCGGGcGGGGGAUAcgcggGUCcCGUGg -3'
miRNA:   3'- aCGGC-GUCCuCCUCCUGU-----UAGuGCAC- -5'
14273 5' -55.9 NC_003521.1 + 68230 0.66 0.950182
Target:  5'- cGCCGCAGGAGcGGuACGuUCACcUGg -3'
miRNA:   3'- aCGGCGUCCUCcUCcUGUuAGUGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.