miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14273 5' -55.9 NC_003521.1 + 16830 1.09 0.004557
Target:  5'- cUGCCGCAGGAGGAGGACAAUCACGUGg -3'
miRNA:   3'- -ACGGCGUCCUCCUCCUGUUAGUGCAC- -5'
14273 5' -55.9 NC_003521.1 + 135791 0.76 0.481076
Target:  5'- cGCUGCGGGAGGAGGAgCAGcgGCGg- -3'
miRNA:   3'- aCGGCGUCCUCCUCCU-GUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 164742 0.76 0.499723
Target:  5'- aG-CGCGGGAGGGGGGCA-UCGCGg- -3'
miRNA:   3'- aCgGCGUCCUCCUCCUGUuAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 154398 0.76 0.499723
Target:  5'- cUGCCGCcaaucAGGAGGcGGGCAcgCGCGUc -3'
miRNA:   3'- -ACGGCG-----UCCUCCuCCUGUuaGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 83938 0.75 0.537923
Target:  5'- aGCCGCAGGGGGuuGACGuucAUCAUGa- -3'
miRNA:   3'- aCGGCGUCCUCCucCUGU---UAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 82635 0.75 0.547634
Target:  5'- cGCCGCcGGAGGAGGGCGucCGCa-- -3'
miRNA:   3'- aCGGCGuCCUCCUCCUGUuaGUGcac -5'
14273 5' -55.9 NC_003521.1 + 92304 0.74 0.5969
Target:  5'- aGgCGCGGGAGGAGGcGCAGcCGCGg- -3'
miRNA:   3'- aCgGCGUCCUCCUCC-UGUUaGUGCac -5'
14273 5' -55.9 NC_003521.1 + 113922 0.73 0.65674
Target:  5'- aGCUGguGGAGGAcaucgccacGGACGcgCACGUc -3'
miRNA:   3'- aCGGCguCCUCCU---------CCUGUuaGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 167617 0.73 0.65674
Target:  5'- cGCCGCAGGcgcucGGGGuCGGUCACGUc -3'
miRNA:   3'- aCGGCGUCCuc---CUCCuGUUAGUGCAc -5'
14273 5' -55.9 NC_003521.1 + 113365 0.73 0.666692
Target:  5'- gGCCGgGGGcgAGGAGGAgGGUUACGg- -3'
miRNA:   3'- aCGGCgUCC--UCCUCCUgUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 193232 0.72 0.696355
Target:  5'- aGCaGCAGGAGGAGGACuccgaccgcCACcGUGg -3'
miRNA:   3'- aCGgCGUCCUCCUCCUGuua------GUG-CAC- -5'
14273 5' -55.9 NC_003521.1 + 58988 0.72 0.715888
Target:  5'- aGCCGCuagAGGAGGGGGACGAcgaaggcUACGg- -3'
miRNA:   3'- aCGGCG---UCCUCCUCCUGUUa------GUGCac -5'
14273 5' -55.9 NC_003521.1 + 172878 0.72 0.715888
Target:  5'- aGCUGCAGGAGGAGGAag---ACGa- -3'
miRNA:   3'- aCGGCGUCCUCCUCCUguuagUGCac -5'
14273 5' -55.9 NC_003521.1 + 129884 0.72 0.715888
Target:  5'- gGCCGgggAGGAGGAGGACGAcgACGg- -3'
miRNA:   3'- aCGGCg--UCCUCCUCCUGUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 116193 0.72 0.735149
Target:  5'- gGCCGCGGaGAGGAGGGagacGUCGcCGUc -3'
miRNA:   3'- aCGGCGUC-CUCCUCCUgu--UAGU-GCAc -5'
14273 5' -55.9 NC_003521.1 + 172419 0.71 0.754069
Target:  5'- cGCCGCGGGAcccgaggcGGAGGAgGAagACGa- -3'
miRNA:   3'- aCGGCGUCCU--------CCUCCUgUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 103879 0.71 0.754069
Target:  5'- cGCCGaCAGGGGGAuGGGCugccgCGCGg- -3'
miRNA:   3'- aCGGC-GUCCUCCU-CCUGuua--GUGCac -5'
14273 5' -55.9 NC_003521.1 + 49010 0.71 0.754069
Target:  5'- cGUCGUAGGGGGcAGuACAGUCACGc- -3'
miRNA:   3'- aCGGCGUCCUCC-UCcUGUUAGUGCac -5'
14273 5' -55.9 NC_003521.1 + 18742 0.71 0.76338
Target:  5'- cGCUGCAGGgcgggcuguGGGAGGACAAcgACGa- -3'
miRNA:   3'- aCGGCGUCC---------UCCUCCUGUUagUGCac -5'
14273 5' -55.9 NC_003521.1 + 4229 0.71 0.76338
Target:  5'- gGCCcCGGGAGGAGGACcGagACGg- -3'
miRNA:   3'- aCGGcGUCCUCCUCCUGuUagUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.